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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051342 through 18771 annotations produced 1 hits



(CG31342):

Annotation Number : CG31342
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051342
Gbrowse : chr3R:8811785-8817265 (+) // 100.0 //
Probeset : 1632567_at
Accessions : protein= NP_001097763; /// NP_001097764;, nucleotide= NM_001104293; /// NM_001104294;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0051342.
BioGrid reports that CG31342 interacts with CG7873 .
VDRC has 2 RNAi stocks for FBgn0051342 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain438 ± 74 of 4 1.60Up
Head210 ± 124 of 4 0.80Down
Eye213 ± 154 of 4 0.77Down
Thoracicoabdominal ganglion261 ± 104 of 4 0.90None
Salivary gland169 ± 84 of 4 0.61Down
Crop343 ± 104 of 4 1.20Up
Midgut81 ± 34 of 4 0.30Down
Tubule141 ± 24 of 4 0.50Down
Hindgut258 ± 64 of 4 0.90None
Heart90 ± 54 of 4 0.33Down
Fat body46 ± 44 of 4 0.17Down
Ovary995 ± 444 of 4 3.60Up
Testis157 ± 74 of 4 0.60Down
Male accessory glands145 ± 44 of 4 0.50Down
Virgin spermatheca85 ± 74 of 4 0.31Down
Mated spermatheca104 ± 134 of 4 0.38Down
Adult carcass105 ± 24 of 4 0.40Down
Larval CNS405 ± 304 of 4 1.46Up
Larval Salivary gland225 ± 104 of 4 0.81Down
Larval midgut78 ± 14 of 4 0.28Down
Larval tubule162 ± 74 of 4 0.60Down
Larval hindgut318 ± 54 of 4 1.15Up
Larval fat body47 ± 84 of 4 0.20Down
Larval trachea424 ± 264 of 4 1.53Up
Larval carcass259 ± 104 of 4 0.94None
S2 cells (growing)568 ± 214 of 4 2.05Up
Whole fly277 ± 124 of 4

Looking for FBgn0051342. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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