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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0051343 through 18771 annotations produced 1 hits


(CG31343):

Annotation Number : CG31343
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051343
Gbrowse : chr3R:17570990-17574723 (+) // 100.0 //
Probeset : 1626832_at
Accessions : protein= NP_524927; /// NP_650209; /// NP_732652;, nucleotide= NM_080188; /// NM_141952; /// NM_169964;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004177 // aminopeptidase activity // inferred
FlyMine data for FBgn0051343.
BDGP gene expression has embryonic in situ data for CG31343: 11 pix of staining in 2 body parts.
TRiP has 1 RNAi stocks for FBgn0051343 available for purchase.
VDRC has 1 RNAi stocks for FBgn0051343 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head4 ± 00 of 4 0.00Down
Eye5 ± 11 of 4 0.01Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland4 ± 10 of 4 0.00Down
Crop1 ± 00 of 4 0.00Down
Midgut4147 ± 1264 of 4 4.70Up
Tubule285 ± 864 of 4 0.30Down
Hindgut3229 ± 764 of 4 3.70Up
Heart2 ± 00 of 4 0.00Down
Fat body3 ± 50 of 4 0.00Down
Ovary5 ± 10 of 4 0.00Down
Testis3 ± 11 of 4 0.00Down
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca9 ± 10 of 4 0.01Down
Mated spermatheca7 ± 10 of 4 0.01Down
Adult carcass9 ± 30 of 4 0.00Down
Larval CNS2 ± 10 of 4 0.00Down
Larval Salivary gland2 ± 00 of 4 0.00Down
Larval midgut5057 ± 2004 of 4 5.79Up
Larval tubule38 ± 104 of 4 0.00Down
Larval hindgut2805 ± 1784 of 4 3.21Up
Larval fat body8 ± 30 of 4 0.00Down
Larval trachea3 ± 20 of 4 0.00Down
Larval carcass1 ± 00 of 4 0.00Down
S2 cells (growing)3 ± 10 of 4 0.00Down
Whole fly873 ± 1034 of 4

Looking for FBgn0051343. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime