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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051352 through 18771 annotations produced 1 hits



(CG31352):

Annotation Number : CG31352
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051352
Gbrowse : chr3R:5520447-5531165 (-) // 100.0 //
Probeset : 1630603_at
Accessions : protein= NP_001163573; /// NP_001163574; /// NP_001163575; /// NP_649930;, nucleotide= NM_001170102; /// NM_001170103; /// NM_001170104; /// NM_141673;
Interpro : 0003779 // actin binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electro
FlyMine data for FBgn0051352.
Homophila reports that CG31352 is a close match (1e-11) to human gene LHX4 (NP_203129), a gene associated with Short stature, pituitary and cerebellar defects, and small sella turcica, 606606 (3).
VDRC has 4 RNAi stocks for FBgn0051352 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain232 ± 64 of 4 2.40Up
Head126 ± 34 of 4 1.30Up
Eye184 ± 134 of 4 1.91Up
Thoracicoabdominal ganglion212 ± 94 of 4 2.20Up
Salivary gland381 ± 194 of 4 3.94Up
Crop240 ± 64 of 4 2.50Up
Midgut325 ± 94 of 4 3.40Up
Tubule262 ± 74 of 4 2.70Up
Hindgut346 ± 34 of 4 3.60Up
Heart150 ± 44 of 4 1.55Up
Fat body122 ± 44 of 4 1.27Up
Ovary13 ± 14 of 4 0.10Down
Testis295 ± 194 of 4 3.00Up
Male accessory glands112 ± 34 of 4 1.20Up
Virgin spermatheca103 ± 74 of 4 1.07None
Mated spermatheca112 ± 44 of 4 1.16Up
Adult carcass112 ± 194 of 4 1.20None
Larval CNS265 ± 164 of 4 2.75Up
Larval Salivary gland331 ± 104 of 4 3.43Up
Larval midgut247 ± 144 of 4 2.56Up
Larval tubule160 ± 64 of 4 1.70Up
Larval hindgut350 ± 184 of 4 3.63Up
Larval fat body81 ± 124 of 4 0.80None
Larval trachea241 ± 194 of 4 2.49Up
Larval carcass192 ± 74 of 4 1.99Up
S2 cells (growing)140 ± 54 of 4 1.45Up
Whole fly96 ± 24 of 4

Looking for FBgn0051352. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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