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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051386 through 18771 annotations produced 2 hits



(CG31386):

Annotation Number : S.C3R000987
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051386
Gbrowse : chr3R:7119369-7123421 (-) // 100.0 //
Probeset : 1629225_s_at
Accessions : protein= NP_731563;, nucleotide= NM_169384;
FlyMine data for FBgn0051386.
BDGP gene expression has embryonic in situ data for CG31386: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0051386 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.50Down
Head1 ± 00 of 4 0.80None
Eye3 ± 10 of 4 2.10None
Thoracicoabdominal ganglion0 ± 00 of 4 0.60None
Salivary gland2 ± 00 of 4 1.81Up
Crop2 ± 10 of 4 1.80None
Midgut3 ± 10 of 4 2.10None
Tubule3 ± 00 of 4 2.00Up
Hindgut3 ± 10 of 4 2.40None
Heart3 ± 10 of 4 2.08None
Fat body4 ± 20 of 4 2.69None
Ovary1 ± 00 of 4 1.00None
Testis2 ± 10 of 4 1.90None
Male accessory glands3 ± 10 of 4 2.20None
Virgin spermatheca1 ± 00 of 4 1.07None
Mated spermatheca0 ± 00 of 4 0.58Down
Adult carcass6 ± 20 of 4 4.40None
Larval CNS3 ± 10 of 4 2.31None
Larval Salivary gland3 ± 10 of 4 2.15None
Larval midgut2 ± 00 of 4 1.51None
Larval tubule1 ± 00 of 4 1.10None
Larval hindgut0 ± 00 of 4 0.53Down
Larval fat body3 ± 10 of 4 2.30None
Larval trachea3 ± 30 of 4 2.47None
Larval carcass1 ± 00 of 4 0.88None
S2 cells (growing)2 ± 00 of 4 1.85None
Whole fly1 ± 00 of 4



(CG31386):

Annotation Number : CG31386
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051386
Gbrowse : chr3R:7095124-7120980 (-) // 100.0 //
Probeset : 1638790_at
Accessions : protein= NP_731563;, nucleotide= NM_169384;
FlyMine data for FBgn0051386.
BDGP gene expression has embryonic in situ data for CG31386: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0051386 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 1.00None
Head1 ± 00 of 4 0.40None
Eye0 ± 00 of 4 0.15None
Thoracicoabdominal ganglion7 ± 10 of 4 1.70None
Salivary gland9 ± 21 of 4 2.35None
Crop3 ± 10 of 4 0.80None
Midgut6 ± 10 of 4 1.60None
Tubule6 ± 00 of 4 1.50Up
Hindgut4 ± 00 of 4 1.00None
Heart4 ± 10 of 4 1.07None
Fat body5 ± 04 of 4 1.35None
Ovary2 ± 01 of 4 0.70None
Testis3 ± 00 of 4 0.70None
Male accessory glands6 ± 10 of 4 1.50None
Virgin spermatheca4 ± 00 of 4 1.05None
Mated spermatheca6 ± 11 of 4 1.52None
Adult carcass8 ± 11 of 4 2.00Up
Larval CNS31 ± 54 of 4 7.58Up
Larval Salivary gland5 ± 10 of 4 1.39None
Larval midgut4 ± 00 of 4 1.04None
Larval tubule3 ± 11 of 4 0.90None
Larval hindgut4 ± 12 of 4 1.16None
Larval fat body5 ± 10 of 4 1.30None
Larval trachea1 ± 00 of 4 0.25None
Larval carcass1 ± 00 of 4 0.48None
S2 cells (growing)3 ± 01 of 4 0.76None
Whole fly4 ± 11 of 4

Looking for FBgn0051386. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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