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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051390 through 18771 annotations produced 1 hits



Mediator complex subunit 7 (MED7):

Annotation Number : CG31390
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051390
Gbrowse : chr3R:6585920-6586655 (-) // 99.41 //
Probeset : 1630318_at
Accessions : protein= NP_731500;, nucleotide= NM_169357;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0016455 // RNA polymerase II transcription mediator
FlyMine data for FBgn0051390.
TRiP has 2 RNAi stocks for FBgn0051390 available for purchase.
VDRC has 1 RNAi stocks for FBgn0051390 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain185 64 of 4 1.60Up
Head123 44 of 4 1.10None
Eye204 44 of 4 1.76Up
Thoracicoabdominal ganglion125 14 of 4 1.10None
Salivary gland75 34 of 4 0.65Down
Crop71 24 of 4 0.60Down
Midgut83 44 of 4 0.70Down
Tubule45 24 of 4 0.40Down
Hindgut69 24 of 4 0.60Down
Heart80 44 of 4 0.69Down
Fat body87 74 of 4 0.76None
Ovary164 24 of 4 1.40Up
Testis73 24 of 4 0.60Down
Male accessory glands182 154 of 4 1.60Up
Virgin spermatheca66 24 of 4 0.57Down
Mated spermatheca69 44 of 4 0.60Down
Adult carcass81 54 of 4 0.70Down
Larval CNS260 104 of 4 2.24Up
Larval Salivary gland144 24 of 4 1.25None
Larval midgut92 54 of 4 0.80None
Larval tubule92 74 of 4 0.80None
Larval hindgut77 34 of 4 0.67Down
Larval fat body120 84 of 4 1.00None
Larval trachea136 74 of 4 1.18None
Larval carcass121 74 of 4 1.05None
S2 cells (growing)125 34 of 4 1.08None
Whole fly115 94 of 4

Looking for FBgn0051390. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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