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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051391 through 18771 annotations produced 1 hits



(CG31391):

Annotation Number : CG31391
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051391
Gbrowse : chr3R:6529093-6530797 (-) // 99.77 //
Probeset : 1626197_at
Accessions : protein= NP_731491;, nucleotide= NM_169352;
FlyMine data for FBgn0051391.
VDRC has 4 RNAi stocks for FBgn0051391 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head5 ± 20 of 4 0.10Down
Eye5 ± 10 of 4 0.09Down
Thoracicoabdominal ganglion7 ± 10 of 4 0.10Down
Salivary gland18 ± 10 of 4 0.32Down
Crop5 ± 00 of 4 0.10Down
Midgut5 ± 01 of 4 0.10Down
Tubule7 ± 01 of 4 0.10Down
Hindgut8 ± 12 of 4 0.10Down
Heart8 ± 12 of 4 0.15Down
Fat body12 ± 43 of 4 0.22Down
Ovary2 ± 00 of 4 0.00Down
Testis832 ± 274 of 414.30Up
Male accessory glands8 ± 21 of 4 0.10Down
Virgin spermatheca14 ± 02 of 4 0.24Down
Mated spermatheca10 ± 12 of 4 0.18Down
Adult carcass7 ± 30 of 4 0.10Down
Larval CNS8 ± 24 of 4 0.15Down
Larval Salivary gland8 ± 01 of 4 0.15Down
Larval midgut8 ± 10 of 4 0.14Down
Larval tubule6 ± 20 of 4 0.10Down
Larval hindgut4 ± 00 of 4 0.07Down
Larval fat body135 ± 654 of 4 2.30None
Larval trachea3 ± 31 of 4 0.06Down
Larval carcass3 ± 00 of 4 0.07Down
S2 cells (growing)4 ± 10 of 4 0.08Down
Whole fly58 ± 74 of 4

Looking for FBgn0051391. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime