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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051406 through 18771 annotations produced 2 hits



(CG31406):

Annotation Number : CG31406
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051406
Gbrowse : chr3R:6174553-6175669 (+) // 100.0 //
Probeset : 1633259_a_at
Accessions : protein= NP_731476; /// NP_731477;, nucleotide= NM_169341; /// NM_169342;
FlyMine data for FBgn0051406.
VDRC has 6 RNAi stocks for FBgn0051406 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.10Down
Head0 ± 00 of 4 0.00Down
Eye3 ± 10 of 4 0.08Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.10Down
Salivary gland5 ± 20 of 4 0.12Down
Crop5 ± 10 of 4 0.10Down
Midgut1 ± 10 of 4 0.00Down
Tubule3 ± 10 of 4 0.10Down
Hindgut3 ± 11 of 4 0.10Down
Heart2 ± 00 of 4 0.07Down
Fat body5 ± 30 of 4 0.13Down
Ovary0 ± 00 of 4 0.00Down
Testis590 ± 294 of 414.70Up
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca3 ± 10 of 4 0.08Down
Mated spermatheca3 ± 10 of 4 0.09Down
Adult carcass7 ± 50 of 4 0.20Down
Larval CNS2 ± 00 of 4 0.06Down
Larval Salivary gland5 ± 21 of 4 0.14Down
Larval midgut3 ± 00 of 4 0.07Down
Larval tubule5 ± 10 of 4 0.10Down
Larval hindgut2 ± 00 of 4 0.06Down
Larval fat body132 ± 814 of 4 3.30None
Larval trachea4 ± 51 of 4 0.11Down
Larval carcass4 ± 00 of 4 0.11Down
S2 cells (growing)3 ± 10 of 4 0.10Down
Whole fly40 ± 34 of 4



(CG31406):

Annotation Number : CG31406
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051406
Gbrowse : chr3R:6174553-6175669 (+) // 100.0 //
Probeset : 1638793_at
Accessions : protein= NP_731476; /// NP_731477;, nucleotide= NM_169341; /// NM_169342;
FlyMine data for FBgn0051406.
VDRC has 6 RNAi stocks for FBgn0051406 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.10Down
Eye0 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland11 ± 30 of 4 0.57None
Crop4 ± 20 of 4 0.20Down
Midgut5 ± 10 of 4 0.30Down
Tubule3 ± 00 of 4 0.20Down
Hindgut4 ± 10 of 4 0.20Down
Heart1 ± 00 of 4 0.06Down
Fat body4 ± 20 of 4 0.20Down
Ovary2 ± 00 of 4 0.10Down
Testis298 ± 204 of 415.20Up
Male accessory glands3 ± 10 of 4 0.20Down
Virgin spermatheca2 ± 10 of 4 0.11Down
Mated spermatheca0 ± 00 of 4 0.05Down
Adult carcass3 ± 10 of 4 0.20Down
Larval CNS3 ± 20 of 4 0.18Down
Larval Salivary gland5 ± 10 of 4 0.29Down
Larval midgut3 ± 10 of 4 0.15Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.06Down
Larval fat body70 ± 393 of 4 3.60None
Larval trachea7 ± 91 of 4 0.38None
Larval carcass1 ± 00 of 4 0.05Down
S2 cells (growing)2 ± 00 of 4 0.12Down
Whole fly19 ± 04 of 4

Looking for FBgn0051406. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime