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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051407 through 18771 annotations produced 1 hits



(CG31407):

Annotation Number : CG31407
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051407
Gbrowse : chr3R:5848567-5849330 (-) // 100.0 //
Probeset : 1624768_at
Accessions : protein= NP_731435;, nucleotide= NM_169322;
FlyMine data for FBgn0051407.
VDRC has 2 RNAi stocks for FBgn0051407 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.00Down
Head2 10 of 4 0.00Down
Eye1 00 of 4 0.01Down
Thoracicoabdominal ganglion3 10 of 4 0.00Down
Salivary gland12 30 of 4 0.07Down
Crop3 00 of 4 0.00Down
Midgut2 10 of 4 0.00Down
Tubule4 00 of 4 0.00Down
Hindgut4 10 of 4 0.00Down
Heart3 20 of 4 0.02Down
Fat body10 21 of 4 0.06Down
Ovary2 10 of 4 0.00Down
Testis1824 454 of 410.00Up
Male accessory glands4 10 of 4 0.00Down
Virgin spermatheca5 10 of 4 0.03Down
Mated spermatheca5 10 of 4 0.03Down
Adult carcass4 10 of 4 0.00Down
Larval CNS2 20 of 4 0.01Down
Larval Salivary gland4 10 of 4 0.02Down
Larval midgut5 10 of 4 0.03Down
Larval tubule3 20 of 4 0.00Down
Larval hindgut2 10 of 4 0.02Down
Larval fat body180 934 of 4 1.00None
Larval trachea7 91 of 4 0.04Down
Larval carcass2 10 of 4 0.02Down
S2 cells (growing)4 00 of 4 0.02Down
Whole fly181 94 of 4

Looking for FBgn0051407. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime