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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051414 through 18771 annotations produced 2 hits



(CG31414):

Annotation Number : Stencil:3R:19521000:19521896:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051414
Gbrowse : chr3R:19530343-19531239 (+) // 100.0 //
Probeset : 1623829_at
Accessions : protein= NP_001097888;, nucleotide= NM_001104418;
Pathway : 0005764 // lysosome // inferred from electronic annotation
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004348 // glucosylceramidase activity // infe
FlyMine data for FBgn0051414.
TRiP has 2 RNAi stocks for FBgn0051414 available for purchase.
VDRC has 4 RNAi stocks for FBgn0051414 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 03 of 4 1.00None
Head21 ± 44 of 4 2.70None
Eye6 ± 11 of 4 0.89None
Thoracicoabdominal ganglion4 ± 11 of 4 0.50None
Salivary gland4 ± 20 of 4 0.56None
Crop2 ± 10 of 4 0.30Down
Midgut6 ± 11 of 4 0.80None
Tubule7 ± 10 of 4 0.90None
Hindgut4 ± 00 of 4 0.50None
Heart11 ± 14 of 4 1.48None
Fat body36 ± 194 of 4 4.69None
Ovary0 ± 00 of 4 0.10Down
Testis4 ± 10 of 4 0.60None
Male accessory glands1 ± 00 of 4 0.20Down
Virgin spermatheca5 ± 10 of 4 0.75None
Mated spermatheca6 ± 01 of 4 0.79None
Adult carcass28 ± 62 of 4 3.60Up
Larval CNS4 ± 13 of 4 0.63None
Larval Salivary gland4 ± 10 of 4 0.51None
Larval midgut8 ± 13 of 4 1.07None
Larval tubule2 ± 10 of 4 0.40None
Larval hindgut2 ± 00 of 4 0.37None
Larval fat body76 ± 74 of 4 9.80Up
Larval trachea1 ± 10 of 4 0.20Down
Larval carcass1 ± 00 of 4 0.19Down
S2 cells (growing)0 ± 00 of 4 0.11Down
Whole fly7 ± 12 of 4



(CG31414):

Annotation Number : CG31414
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051414
Gbrowse : chr3R:19531502-19532790 (+) // 100.0 //
Probeset : 1630993_at
Accessions : protein= NP_001097888;, nucleotide= NM_001104418;
Pathway : 0005764 // lysosome // inferred from electronic annotation
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004348 // glucosylceramidase activity // infe
FlyMine data for FBgn0051414.
Homophila reports that CG31414 is a close match (5e-74) to human gene GBA (NP_001005750), a gene associated with Gaucher disease, perinatal lethal, 608013 (3);Gaucher disease, type I, 230800(3);Gaucher disease, type II, 230900 (3);Gaucher disease, type III, 231000 (3);Gaucher disease, type IIIC, 231005 (3).
BioGrid reports that CG31414 interacts with CG3647 .
TRiP has 2 RNAi stocks for FBgn0051414 available for purchase.
VDRC has 4 RNAi stocks for FBgn0051414 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain25 ± 04 of 4 1.10None
Head81 ± 74 of 4 3.60Up
Eye29 ± 24 of 4 1.30None
Thoracicoabdominal ganglion19 ± 04 of 4 0.90None
Salivary gland3 ± 10 of 4 0.16Down
Crop5 ± 20 of 4 0.30Down
Midgut2 ± 00 of 4 0.10Down
Tubule2 ± 00 of 4 0.10Down
Hindgut9 ± 32 of 4 0.40Down
Heart70 ± 54 of 4 3.16Up
Fat body184 ± 484 of 4 8.24Up
Ovary0 ± 00 of 4 0.00Down
Testis27 ± 24 of 4 1.20None
Male accessory glands10 ± 20 of 4 0.40Down
Virgin spermatheca52 ± 44 of 4 2.34Up
Mated spermatheca35 ± 44 of 4 1.59None
Adult carcass122 ± 94 of 4 5.50Up
Larval CNS19 ± 24 of 4 0.85None
Larval Salivary gland4 ± 10 of 4 0.22Down
Larval midgut7 ± 10 of 4 0.32Down
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut6 ± 21 of 4 0.29Down
Larval fat body263 ± 224 of 411.80Up
Larval trachea1 ± 00 of 4 0.05Down
Larval carcass2 ± 00 of 4 0.09Down
S2 cells (growing)1 ± 00 of 4 0.04Down
Whole fly22 ± 34 of 4

Looking for FBgn0051414. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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