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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051415 through 18771 annotations produced 1 hits



(CG31415):

Annotation Number : CG31415
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051415
Gbrowse : chr3R:5569238-5570271 (+) // 100.0 //
Probeset : 1638802_at
Accessions : protein= NP_731395;, nucleotide= NM_169305;
FlyMine data for FBgn0051415.
VDRC has 3 RNAi stocks for FBgn0051415 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 10 of 4 0.10Down
Head5 00 of 4 0.10Down
Eye7 20 of 4 0.07Down
Thoracicoabdominal ganglion6 00 of 4 0.10Down
Salivary gland17 31 of 4 0.17Down
Crop7 10 of 4 0.10Down
Midgut17 10 of 4 0.20Down
Tubule3 10 of 4 0.00Down
Hindgut8 20 of 4 0.10Down
Heart6 20 of 4 0.07Down
Fat body11 40 of 4 0.12Down
Ovary6 10 of 4 0.10Down
Testis955 634 of 4 9.50Up
Male accessory glands6 20 of 4 0.10Down
Virgin spermatheca8 20 of 4 0.08Down
Mated spermatheca10 10 of 4 0.10Down
Adult carcass10 30 of 4 0.10Down
Larval CNS3 20 of 4 0.03Down
Larval Salivary gland2 00 of 4 0.03Down
Larval midgut17 20 of 4 0.17Down
Larval tubule7 20 of 4 0.10Down
Larval hindgut3 10 of 4 0.03Down
Larval fat body78 303 of 4 0.80None
Larval trachea5 40 of 4 0.06Down
Larval carcass9 30 of 4 0.10Down
S2 cells (growing)10 20 of 4 0.11Down
Whole fly100 14 of 4

Looking for FBgn0051415. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime