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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051436 through 18771 annotations produced 1 hits



(CG31436):

Annotation Number : CG31436
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051436
Gbrowse : chr3R:21129920-21131311 (+) // 100.0 //
Probeset : 1626326_at
Accessions : protein= NP_733096;, nucleotide= NM_170217;
FlyMine data for FBgn0051436.
VDRC has 4 RNAi stocks for FBgn0051436 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain28 ± 14 of 4 0.90None
Head126 ± 14 of 4 4.30Up
Eye164 ± 164 of 4 5.57Up
Thoracicoabdominal ganglion51 ± 44 of 4 1.80Up
Salivary gland102 ± 84 of 4 3.47Up
Crop82 ± 14 of 4 2.80Up
Midgut122 ± 34 of 4 4.20Up
Tubule121 ± 64 of 4 4.10Up
Hindgut147 ± 24 of 4 5.00Up
Heart113 ± 94 of 4 3.86Up
Fat body89 ± 114 of 4 3.04Up
Ovary0 ± 00 of 4 0.00Down
Testis4 ± 00 of 4 0.20Down
Male accessory glands17 ± 30 of 4 0.60None
Virgin spermatheca244 ± 64 of 4 8.31Up
Mated spermatheca252 ± 84 of 4 8.56Up
Adult carcass80 ± 34 of 4 2.70Up
Larval CNS7 ± 10 of 4 0.25Down
Larval Salivary gland169 ± 114 of 4 5.74Up
Larval midgut108 ± 154 of 4 3.70Up
Larval tubule178 ± 164 of 4 6.10Up
Larval hindgut118 ± 134 of 4 4.03Up
Larval fat body414 ± 664 of 414.10Up
Larval trachea108 ± 264 of 4 3.68Up
Larval carcass46 ± 64 of 4 1.57None
S2 cells (growing)94 ± 84 of 4 3.21Up
Whole fly29 ± 44 of 4

Looking for FBgn0051436. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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