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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051439 through 18771 annotations produced 2 hits



Mucin 96D (Muc96D):

Annotation Number : CG31439
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051439
Gbrowse : chr3R:21223960-21226340 (-) // 99.9 //
Probeset : 1636058_at
Accessions : protein= NP_733106;, nucleotide= NM_170227;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from elec
FlyMine data for FBgn0051439.
VDRC has 2 RNAi stocks for FBgn0051439 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 6.20Up
Head3 ± 20 of 4 5.00None
Eye4 ± 11 of 4 6.00None
Thoracicoabdominal ganglion5 ± 11 of 4 6.40Up
Salivary gland29 ± 132 of 437.45None
Crop3 ± 10 of 4 4.40None
Midgut4 ± 10 of 4 5.60None
Tubule4 ± 00 of 4 5.30Up
Hindgut4 ± 10 of 4 5.30None
Heart0 ± 00 of 4 0.87None
Fat body6 ± 50 of 4 8.71None
Ovary1 ± 00 of 4 2.20None
Testis2 ± 00 of 4 2.60None
Male accessory glands6 ± 10 of 4 8.30None
Virgin spermatheca5 ± 00 of 4 7.35Up
Mated spermatheca5 ± 20 of 4 7.32None
Adult carcass1 ± 00 of 4 2.40Up
Larval CNS3 ± 22 of 4 4.81None
Larval Salivary gland17 ± 13 of 422.68Up
Larval midgut6171 ± 1534 of 47962.97Up
Larval tubule4 ± 10 of 4 5.50None
Larval hindgut6 ± 22 of 4 8.84None
Larval fat body6 ± 00 of 4 8.80Up
Larval trachea0 ± 00 of 4 1.19None
Larval carcass3 ± 10 of 4 4.00None
S2 cells (growing)4 ± 00 of 4 5.45Up
Whole fly0 ± 00 of 4



Mucin 96D (Muc96D):

Annotation Number : CG31439
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051439
Gbrowse : chr3R:21223960-21226340 (-) // 99.9 //
Probeset : 1635733_x_at
Accessions : protein= NP_733106;, nucleotide= NM_170227;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from elec
FlyMine data for FBgn0051439.
VDRC has 2 RNAi stocks for FBgn0051439 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 00 of 4 3.20Up
Head2 ± 00 of 4 1.30None
Eye5 ± 31 of 4 2.69None
Thoracicoabdominal ganglion8 ± 21 of 4 3.60None
Salivary gland31 ± 132 of 414.08None
Crop3 ± 00 of 4 1.50None
Midgut3 ± 10 of 4 1.70None
Tubule9 ± 00 of 4 4.20Up
Hindgut3 ± 10 of 4 1.60None
Heart3 ± 10 of 4 1.44None
Fat body10 ± 50 of 4 4.75Up
Ovary4 ± 00 of 4 1.80None
Testis1 ± 00 of 4 0.70None
Male accessory glands13 ± 22 of 4 6.00Up
Virgin spermatheca4 ± 10 of 4 1.83None
Mated spermatheca2 ± 00 of 4 1.18None
Adult carcass3 ± 00 of 4 1.40None
Larval CNS6 ± 22 of 4 3.07Up
Larval Salivary gland42 ± 34 of 419.27Up
Larval midgut6234 ± 1744 of 42833.67Up
Larval tubule7 ± 01 of 4 3.20Up
Larval hindgut13 ± 23 of 4 6.30Up
Larval fat body6 ± 20 of 4 2.90None
Larval trachea1 ± 10 of 4 0.90None
Larval carcass6 ± 21 of 4 3.08None
S2 cells (growing)5 ± 10 of 4 2.33None
Whole fly2 ± 00 of 4

Looking for FBgn0051439. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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