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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051450 through 18771 annotations produced 1 hits



mitochondrial ribosomal protein S18A (mRpS18A):

Annotation Number : CG31450
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051450
Gbrowse : chr3R:4387627-4388305 (-) // 100.0 //
Probeset : 1629478_at
Accessions : protein= NP_731252;, nucleotide= NM_169226;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005763 // mitochondrial small ribosomal subunit //
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0051450.
BioGrid reports that CG31450 interacts with CG3612 CG7357 .
VDRC has 3 RNAi stocks for FBgn0051450 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain366 44 of 4 1.00None
Head183 84 of 4 0.50Down
Eye79 44 of 4 0.21Down
Thoracicoabdominal ganglion378 94 of 4 1.00None
Salivary gland162 44 of 4 0.43Down
Crop165 94 of 4 0.40Down
Midgut215 84 of 4 0.60Down
Tubule141 74 of 4 0.40Down
Hindgut237 54 of 4 0.60Down
Heart230 74 of 4 0.61Down
Fat body242 154 of 4 0.64Down
Ovary593 14 of 4 1.60Up
Testis259 114 of 4 0.70Down
Male accessory glands99 64 of 4 0.30Down
Virgin spermatheca168 104 of 4 0.44Down
Mated spermatheca190 134 of 4 0.50Down
Adult carcass234 184 of 4 0.60Down
Larval CNS345 194 of 4 0.91None
Larval Salivary gland198 94 of 4 0.52Down
Larval midgut119 74 of 4 0.32Down
Larval tubule79 44 of 4 0.20Down
Larval hindgut215 174 of 4 0.57Down
Larval fat body113 64 of 4 0.30Down
Larval trachea290 424 of 4 0.77Down
Larval carcass153 144 of 4 0.41Down
S2 cells (growing)198 14 of 4 0.53Down
Whole fly378 224 of 4

Looking for FBgn0051450. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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