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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051454 through 18771 annotations produced 1 hits



(CG31454):

Annotation Number : CG31454
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051454
Gbrowse : chr3R:4347747-4349242 (+) // 100.0 //
Probeset : 1632030_at
Accessions : protein= NP_731250;, nucleotide= NM_169224;
FlyMine data for FBgn0051454.
VDRC has 1 RNAi stocks for FBgn0051454 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.30Down
Head7 13 of 4 0.50Down
Eye6 11 of 4 0.44Down
Thoracicoabdominal ganglion7 00 of 4 0.50Down
Salivary gland6 40 of 4 0.50None
Crop7 10 of 4 0.50Down
Midgut112 84 of 4 8.10Up
Tubule43 94 of 4 3.10Up
Hindgut20 14 of 4 1.50Up
Heart8 04 of 4 0.62None
Fat body24 54 of 4 1.79Up
Ovary2 10 of 4 0.20Down
Testis4 00 of 4 0.30Down
Male accessory glands5 20 of 4 0.40Down
Virgin spermatheca20 24 of 4 1.45None
Mated spermatheca22 14 of 4 1.61Up
Adult carcass15 42 of 4 1.10None
Larval CNS5 13 of 4 0.39Down
Larval Salivary gland3 01 of 4 0.27Down
Larval midgut287 454 of 420.76Up
Larval tubule25 04 of 4 1.90Up
Larval hindgut36 54 of 4 2.63Up
Larval fat body41 44 of 4 3.00Up
Larval trachea6 12 of 4 0.43Down
Larval carcass5 01 of 4 0.38Down
S2 cells (growing)20 24 of 4 1.51None
Whole fly13 14 of 4

Looking for FBgn0051454. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime