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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051460 through 18771 annotations produced 1 hits



(CG31460):

Annotation Number : CG31460
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051460
Gbrowse : chr3R:4388573-4389170 (+) // 100.0 //
Probeset : 1638549_at
Accessions : protein= NP_731253;, nucleotide= NM_169227;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0051460.
TRiP has 1 RNAi stocks for FBgn0051460 available for purchase.
VDRC has 2 RNAi stocks for FBgn0051460 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain133 ± 44 of 4 0.80Down
Head103 ± 44 of 4 0.70Down
Eye136 ± 24 of 4 0.86Down
Thoracicoabdominal ganglion150 ± 94 of 4 0.90None
Salivary gland279 ± 44 of 4 1.76Up
Crop115 ± 24 of 4 0.70Down
Midgut67 ± 04 of 4 0.40Down
Tubule65 ± 44 of 4 0.40Down
Hindgut109 ± 54 of 4 0.70Down
Heart133 ± 14 of 4 0.84Down
Fat body62 ± 64 of 4 0.39Down
Ovary295 ± 64 of 4 1.90Up
Testis132 ± 44 of 4 0.80Down
Male accessory glands324 ± 84 of 4 2.00Up
Virgin spermatheca114 ± 44 of 4 0.72Down
Mated spermatheca119 ± 54 of 4 0.75Down
Adult carcass76 ± 34 of 4 0.50Down
Larval CNS495 ± 84 of 4 3.11Up
Larval Salivary gland646 ± 284 of 4 4.06Up
Larval midgut97 ± 34 of 4 0.61Down
Larval tubule65 ± 24 of 4 0.40Down
Larval hindgut146 ± 24 of 4 0.92None
Larval fat body125 ± 104 of 4 0.80Down
Larval trachea460 ± 364 of 4 2.89Up
Larval carcass178 ± 84 of 4 1.12None
S2 cells (growing)355 ± 34 of 4 2.23Up
Whole fly159 ± 44 of 4

Looking for FBgn0051460. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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