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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051472 through 18771 annotations produced 1 hits



(CG31472):

Annotation Number : CG31472
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051472
Gbrowse : chr3R:3636284-3637636 (+) // 99.67 //
Probeset : 1635552_s_at
Accessions : protein= NP_731186; /// NP_731187;, nucleotide= NM_169194; /// NM_169195;
Interpro : "0004733 // pyridoxamine-phosphate oxidase activity // inferred from sequence or structural similarity /// 0004733 // py
FlyMine data for FBgn0051472.
BDGP gene expression has embryonic in situ data for CG31472: 6 pix of staining in 1 body parts.
Homophila reports that CG31472 is a close match (3e-53) to human gene PNPO (NP_060599), a gene associated with Pyridoxamine 5'-phosphate oxidase deficiency, 610090 (3).
BioGrid reports that CG31472 interacts with CG7838 .
VDRC has 1 RNAi stocks for FBgn0051472 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain136 ± 14 of 4 0.60Down
Head247 ± 54 of 4 1.00None
Eye142 ± 34 of 4 0.58Down
Thoracicoabdominal ganglion142 ± 24 of 4 0.60Down
Salivary gland1301 ± 524 of 4 5.29Up
Crop1006 ± 414 of 4 4.10Up
Midgut612 ± 94 of 4 2.50Up
Tubule738 ± 114 of 4 3.00Up
Hindgut523 ± 64 of 4 2.10Up
Heart142 ± 44 of 4 0.58Down
Fat body218 ± 104 of 4 0.89None
Ovary299 ± 94 of 4 1.20Up
Testis78 ± 34 of 4 0.30Down
Male accessory glands753 ± 104 of 4 3.10Up
Virgin spermatheca465 ± 254 of 4 1.89Up
Mated spermatheca513 ± 124 of 4 2.08Up
Adult carcass229 ± 24 of 4 0.90None
Larval CNS138 ± 144 of 4 0.56Down
Larval Salivary gland476 ± 144 of 4 1.94Up
Larval midgut291 ± 94 of 4 1.18Up
Larval tubule598 ± 234 of 4 2.40Up
Larval hindgut338 ± 144 of 4 1.37Up
Larval fat body177 ± 164 of 4 0.70Down
Larval trachea804 ± 134 of 4 3.27Up
Larval carcass465 ± 194 of 4 1.89Up
S2 cells (growing)174 ± 34 of 4 0.71Down
Whole fly246 ± 94 of 4

Looking for FBgn0051472. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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