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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051481 through 18771 annotations produced 1 hits



proboscipedia (pb):

Annotation Number : CG31481
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051481
Gbrowse : chr3R:2533929-2538748 (-) // 100.0 //
Probeset : 1624703_at
Accessions : protein= NP_476669; /// NP_996161; /// NP_996162; /// NP_996163;, nucleotide= NM_057321; /// NM_206439; /// NM_206440; /// NM_206441;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
Interpro : labial segment // inferred from mutant phenotype /// 0007381 // specification of segmental identity
FlyMine data for FBgn0051481.
Homophila reports that CG31481 is a close match (4e-11) to human gene HOXA11;HOX1I (NP_005514), a gene associated with Radioulnar synostosis with amegakaryocytic thrombocytopenia, 605432 (3).
BioGrid reports that CG31481 interacts with CG10488 CG5460 CG1264 CG1030 CG1030 CG1030 CG1030 CG9936 CG6721 CG6721 CG1464 CG1464 CG1464 CG1464 CG7957 CG10595 .
TRiP has 1 RNAi stocks for FBgn0051481 available for purchase.
VDRC has 1 RNAi stocks for FBgn0051481 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 01 of 4 0.90None
Head12 ± 23 of 4 2.10None
Eye1 ± 10 of 4 0.31Down
Thoracicoabdominal ganglion16 ± 24 of 4 2.80Up
Salivary gland2 ± 00 of 4 0.44Down
Crop6 ± 10 of 4 1.00None
Midgut3 ± 10 of 4 0.50None
Tubule3 ± 00 of 4 0.50Down
Hindgut2 ± 10 of 4 0.30Down
Heart3 ± 10 of 4 0.51None
Fat body5 ± 30 of 4 0.94None
Ovary3 ± 00 of 4 0.60None
Testis16 ± 14 of 4 2.70Up
Male accessory glands5 ± 20 of 4 0.80None
Virgin spermatheca2 ± 10 of 4 0.41None
Mated spermatheca2 ± 10 of 4 0.34Down
Adult carcass7 ± 10 of 4 1.20None
Larval CNS9 ± 23 of 4 1.53None
Larval Salivary gland4 ± 10 of 4 0.78None
Larval midgut4 ± 10 of 4 0.67None
Larval tubule4 ± 10 of 4 0.70None
Larval hindgut2 ± 00 of 4 0.32Down
Larval fat body6 ± 10 of 4 1.10None
Larval trachea1 ± 10 of 4 0.28Down
Larval carcass6 ± 10 of 4 1.03None
S2 cells (growing)1 ± 00 of 4 0.29Down
Whole fly6 ± 10 of 4

Looking for FBgn0051481. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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