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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0051482 through 18771 annotations produced 1 hits


Annotation Number : CG31482
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051482
Gbrowse : chr3R:2427031-2427850 (+) // 99.24 //
Probeset : 1639598_at
Accessions : protein= NP_731097;, nucleotide= NM_169150;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
FlyMine data for FBgn0051482.
BioGrid reports that CG31482 interacts with CG32365 CG3919 CG4617 CG5441 CG6046 CG6293 CG8319 CG8495 CG32484 CG33531 .
VDRC has 3 RNAi stocks for FBgn0051482 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 01 of 4 0.10Down
Head6 10 of 4 0.00Down
Eye3 10 of 4 0.02Down
Thoracicoabdominal ganglion5 10 of 4 0.00Down
Salivary gland30 40 of 4 0.21Down
Crop15 10 of 4 0.10Down
Midgut10 30 of 4 0.10Down
Tubule10 01 of 4 0.10Down
Hindgut10 10 of 4 0.10Down
Heart3 10 of 4 0.03Down
Fat body22 31 of 4 0.15Down
Ovary5 10 of 4 0.00Down
Testis1288 294 of 4 9.10Up
Male accessory glands14 10 of 4 0.10Down
Virgin spermatheca8 00 of 4 0.06Down
Mated spermatheca9 10 of 4 0.07Down
Adult carcass15 50 of 4 0.10Down
Larval CNS8 13 of 4 0.06Down
Larval Salivary gland10 21 of 4 0.08Down
Larval midgut3 00 of 4 0.03Down
Larval tubule14 10 of 4 0.10Down
Larval hindgut8 10 of 4 0.06Down
Larval fat body240 1334 of 4 1.70None
Larval trachea14 142 of 4 0.10Down
Larval carcass8 20 of 4 0.06Down
S2 cells (growing)4 10 of 4 0.03Down
Whole fly142 54 of 4

Looking for FBgn0051482. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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