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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051495 through 18771 annotations produced 1 hits



(CG31495):

Annotation Number : CG31495
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051495
Gbrowse : chr3R:9663959-9665652 (-) // 100.0 //
Probeset : 1624075_at
Accessions : protein= NP_731866;, nucleotide= NM_169559;
Interpro : 0005524 // ATP binding // inferred from electronic annotation
FlyMine data for FBgn0051495.
VDRC has 2 RNAi stocks for FBgn0051495 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 20 of 4 0.20Down
Head26 ± 30 of 4 0.60Down
Eye22 ± 24 of 4 0.48Down
Thoracicoabdominal ganglion16 ± 20 of 4 0.30Down
Salivary gland60 ± 62 of 4 1.28None
Crop42 ± 30 of 4 0.90None
Midgut37 ± 30 of 4 0.80None
Tubule35 ± 11 of 4 0.70Down
Hindgut54 ± 10 of 4 1.20None
Heart35 ± 14 of 4 0.76Down
Fat body55 ± 111 of 4 1.17None
Ovary73 ± 34 of 4 1.60Up
Testis12 ± 30 of 4 0.30Down
Male accessory glands58 ± 142 of 4 1.20None
Virgin spermatheca45 ± 41 of 4 0.96None
Mated spermatheca45 ± 80 of 4 0.97None
Adult carcass32 ± 50 of 4 0.70None
Larval CNS34 ± 61 of 4 0.74Down
Larval Salivary gland60 ± 20 of 4 1.28Up
Larval midgut35 ± 20 of 4 0.76Down
Larval tubule86 ± 54 of 4 1.80Up
Larval hindgut67 ± 44 of 4 1.42Up
Larval fat body55 ± 80 of 4 1.20None
Larval trachea34 ± 44 of 4 0.73Down
Larval carcass50 ± 12 of 4 1.06None
S2 cells (growing)46 ± 10 of 4 0.98None
Whole fly47 ± 33 of 4

Looking for FBgn0051495. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime