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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0051524 through 18771 annotations produced 1 hits


(CG31524):

Annotation Number : CG31524
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051524
Gbrowse : chr3R:26338280-26340017 (-) // 100.0 //
Probeset : 1635953_at
Accessions : protein= NP_001036777; /// NP_733379;, nucleotide= NM_001043312; /// NM_170500;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation
Interpro : "0004656 // procollagen-proline 4-dioxygenase activity // inferred from sequence or structural similarity /// 0004656 //
FlyMine data for FBgn0051524.
VDRC has 3 RNAi stocks for FBgn0051524 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.10Down
Head3 ± 00 of 4 0.10Down
Eye1 ± 00 of 4 0.05Down
Thoracicoabdominal ganglion1 ± 10 of 4 0.10Down
Salivary gland3 ± 10 of 4 0.16Down
Crop1 ± 00 of 4 0.10Down
Midgut4 ± 10 of 4 0.20Down
Tubule3 ± 00 of 4 0.10Down
Hindgut3 ± 10 of 4 0.10Down
Heart1 ± 00 of 4 0.05Down
Fat body2 ± 10 of 4 0.08Down
Ovary1 ± 00 of 4 0.10Down
Testis4 ± 21 of 4 0.20Down
Male accessory glands2736 ± 534 of 4117.30Up
Virgin spermatheca2 ± 10 of 4 0.12Down
Mated spermatheca2 ± 00 of 4 0.09Down
Adult carcass7 ± 31 of 4 0.30Down
Larval CNS2 ± 21 of 4 0.10Down
Larval Salivary gland2 ± 10 of 4 0.09Down
Larval midgut1 ± 00 of 4 0.07Down
Larval tubule3 ± 10 of 4 0.20Down
Larval hindgut1 ± 00 of 4 0.07Down
Larval fat body2 ± 00 of 4 0.10Down
Larval trachea2 ± 10 of 4 0.11Down
Larval carcass3 ± 11 of 4 0.15Down
S2 cells (growing)1 ± 10 of 4 0.08Down
Whole fly23 ± 14 of 4

Looking for FBgn0051524. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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