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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051538 through 18771 annotations produced 1 hits



(CG31538):

Annotation Number : CG31538
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051538
Gbrowse : chr3R:1101399-1103557 (-) // 99.72 //
Probeset : 1628650_at
Accessions : protein= NP_730917;, nucleotide= NM_169046;
FlyMine data for FBgn0051538.
VDRC has 2 RNAi stocks for FBgn0051538 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 ± 20 of 4 0.00Down
Head7 ± 20 of 4 0.00Down
Eye0 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion10 ± 20 of 4 0.00Down
Salivary gland47 ± 43 of 4 0.08Down
Crop17 ± 20 of 4 0.00Down
Midgut3 ± 00 of 4 0.00Down
Tubule14 ± 11 of 4 0.00Down
Hindgut16 ± 10 of 4 0.00Down
Heart1 ± 00 of 4 0.00Down
Fat body19 ± 80 of 4 0.03Down
Ovary3 ± 00 of 4 0.00Down
Testis3085 ± 1524 of 4 5.50Up
Male accessory glands27 ± 33 of 4 0.00Down
Virgin spermatheca17 ± 23 of 4 0.03Down
Mated spermatheca27 ± 83 of 4 0.05Down
Adult carcass22 ± 70 of 4 0.00Down
Larval CNS12 ± 30 of 4 0.02Down
Larval Salivary gland15 ± 10 of 4 0.03Down
Larval midgut9 ± 30 of 4 0.02Down
Larval tubule10 ± 20 of 4 0.00Down
Larval hindgut10 ± 00 of 4 0.02Down
Larval fat body497 ± 2604 of 4 0.90None
Larval trachea14 ± 231 of 4 0.03Down
Larval carcass8 ± 20 of 4 0.02Down
S2 cells (growing)2 ± 00 of 4 0.00Down
Whole fly561 ± 594 of 4

Looking for FBgn0051538. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime