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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0051542 through 18771 annotations produced 1 hits


(CG31542):

Annotation Number : CG31542
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051542 /// FBgn0085306
Gbrowse : chr3R:1195261-1196152 (+) // 99.52 //
Probeset : 1622956_at
Accessions : protein= NP_730924;, nucleotide= NM_169051;
FlyMine data for FBgn0051542 /// FBgn0085306.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye3 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland3 ± 10 of 4 0.03Down
Crop3 ± 10 of 4 0.00Down
Midgut2 ± 00 of 4 0.00Down
Tubule2 ± 00 of 4 0.00Down
Hindgut6 ± 10 of 4 0.00Down
Heart1 ± 00 of 4 0.01Down
Fat body1 ± 00 of 4 0.01Down
Ovary1 ± 00 of 4 0.00Down
Testis1424 ± 234 of 410.10Up
Male accessory glands2 ± 10 of 4 0.00Down
Virgin spermatheca2 ± 10 of 4 0.02Down
Mated spermatheca5 ± 10 of 4 0.04Down
Adult carcass4 ± 20 of 4 0.00Down
Larval CNS2 ± 10 of 4 0.02Down
Larval Salivary gland2 ± 00 of 4 0.01Down
Larval midgut8 ± 30 of 4 0.06Down
Larval tubule3 ± 20 of 4 0.00Down
Larval hindgut2 ± 00 of 4 0.02Down
Larval fat body118 ± 544 of 4 0.80None
Larval trachea7 ± 91 of 4 0.05Down
Larval carcass4 ± 10 of 4 0.03Down
S2 cells (growing)2 ± 00 of 4 0.02Down
Whole fly141 ± 44 of 4

Looking for FBgn0051542. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime