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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051546 through 18771 annotations produced 1 hits



(CG31546):

Annotation Number : CG31546
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051546
Gbrowse : chr3R:1460346-1461346 (-) // 100.0 //
Probeset : 1624949_at
Accessions : protein= NP_730973;, nucleotide= NM_169084;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0051546.
BDGP gene expression has embryonic in situ data for CG31546: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0051546 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 00 of 4 0.00Down
Head4 10 of 4 0.10Down
Eye4 10 of 4 0.04Down
Thoracicoabdominal ganglion4 10 of 4 0.00Down
Salivary gland8 20 of 4 0.09Down
Crop6 00 of 4 0.10Down
Midgut6 20 of 4 0.10Down
Tubule6 00 of 4 0.10Down
Hindgut3 10 of 4 0.00Down
Heart3 11 of 4 0.03Down
Fat body9 11 of 4 0.10Down
Ovary2 10 of 4 0.00Down
Testis951 354 of 410.00Up
Male accessory glands9 10 of 4 0.10Down
Virgin spermatheca8 11 of 4 0.09Down
Mated spermatheca8 21 of 4 0.09Down
Adult carcass9 11 of 4 0.10Down
Larval CNS4 11 of 4 0.05Down
Larval Salivary gland7 20 of 4 0.07Down
Larval midgut4 20 of 4 0.05Down
Larval tubule4 10 of 4 0.10Down
Larval hindgut4 21 of 4 0.05Down
Larval fat body66 323 of 4 0.70None
Larval trachea8 32 of 4 0.09Down
Larval carcass6 00 of 4 0.07Down
S2 cells (growing)4 00 of 4 0.04Down
Whole fly95 34 of 4

Looking for FBgn0051546. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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