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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051547 through 18771 annotations produced 1 hits



(CG31547):

Annotation Number : CG31547
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051547
Gbrowse : chr3R:1315226-1328424 (-) // 100.0 //
Probeset : 1629256_a_at
Accessions : protein= NP_730938; /// NP_730939;, nucleotide= NM_169057; /// NM_169058;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0008511 // sodium:potassium:chloride symporter activity // inferred from sequence or structural similarity /// 0015171 /
FlyMine data for FBgn0051547.
BDGP gene expression has embryonic in situ data for CG31547: 16 pix of staining in 3 body parts.
Homophila reports that CG31547 is a close match (1e-42) to human gene ACCPN;KCC3;KCC3A;KCC3B;SLC12A6 (NP_598408), a gene associated with Agenesis of the corpus callosum with peripheral neuropathy, 218000 (3).
VDRC has 3 RNAi stocks for FBgn0051547 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain273 24 of 4 2.20Up
Head279 114 of 4 2.20Up
Eye105 104 of 4 0.84None
Thoracicoabdominal ganglion171 44 of 4 1.40Up
Salivary gland2805 364 of 422.32Up
Crop308 74 of 4 2.50Up
Midgut98 64 of 4 0.80Down
Tubule62 304 of 4 0.50Down
Hindgut3715 864 of 429.60Up
Heart240 114 of 4 1.91Up
Fat body13 70 of 4 0.10Down
Ovary10 00 of 4 0.10Down
Testis116 54 of 4 0.90None
Male accessory glands2244 1134 of 417.90Up
Virgin spermatheca2 10 of 4 0.02Down
Mated spermatheca2 00 of 4 0.02Down
Adult carcass41 24 of 4 0.30Down
Larval CNS159 34 of 4 1.27Up
Larval Salivary gland626 254 of 4 4.98Up
Larval midgut150 144 of 4 1.20None
Larval tubule9 21 of 4 0.10Down
Larval hindgut886 264 of 4 7.05Up
Larval fat body16 41 of 4 0.10Down
Larval trachea30 113 of 4 0.25Down
Larval carcass234 814 of 4 1.86None
S2 cells (growing)2 00 of 4 0.02Down
Whole fly125 84 of 4

Looking for FBgn0051547. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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