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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051548 through 18771 annotations produced 1 hits



(CG31548):

Annotation Number : CG31548
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051548
Gbrowse : chr3R:1461621-1462567 (-) // 100.0 //
Probeset : 1634041_at
Accessions : protein= NP_730974;, nucleotide= NM_169085;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0051548.
Homophila reports that CG31548 is a close match (2e-12) to human gene RDH5 (NP_002896), a gene associated with Fundus albipunctatus, 136880 (3).
VDRC has 2 RNAi stocks for FBgn0051548 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain95 54 of 4 0.20Down
Head657 324 of 4 1.60Up
Eye381 294 of 4 0.93None
Thoracicoabdominal ganglion109 74 of 4 0.30Down
Salivary gland488 274 of 4 1.19None
Crop485 164 of 4 1.20Up
Midgut401 204 of 4 1.00None
Tubule1797 1484 of 4 4.40Up
Hindgut730 204 of 4 1.80Up
Heart693 224 of 4 1.69Up
Fat body1180 564 of 4 2.87Up
Ovary393 44 of 4 1.00None
Testis35 24 of 4 0.10Down
Male accessory glands223 154 of 4 0.50Down
Virgin spermatheca879 644 of 4 2.14Up
Mated spermatheca686 224 of 4 1.67Up
Adult carcass715 334 of 4 1.70Up
Larval CNS242 184 of 4 0.59Down
Larval Salivary gland809 234 of 4 1.97Up
Larval midgut422 134 of 4 1.03None
Larval tubule682 664 of 4 1.70Up
Larval hindgut790 514 of 4 1.92Up
Larval fat body183 194 of 4 0.40Down
Larval trachea461 334 of 4 1.12None
Larval carcass465 454 of 4 1.13None
S2 cells (growing)209 64 of 4 0.51Down
Whole fly411 184 of 4

Looking for FBgn0051548. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime