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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051549 through 18771 annotations produced 1 hits



(CG31549):

Annotation Number : CG31549
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051549
Gbrowse : chr3R:1457913-1459043 (+) // 100.0 //
Probeset : 1629614_at
Accessions : protein= NP_730972;, nucleotide= NM_169083;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0051549.
BDGP gene expression has embryonic in situ data for CG31549: 4 pix of staining in 1 body parts.
Homophila reports that CG31549 is a close match (3e-11) to human gene ERAB;HADH2;HSD17B10;MRX17;MRX31;MRXS10 (NP_004484), a gene associated with 2-methyl-3-hydroxybutyryl-CoA dehydrogenase deficiency, 300438 (3);Mental retardation, X-linked 17/31, microduplication, 300705 (3);Mental retardation, X-linked syndromic 10, 300220 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain216 ± 34 of 4 0.60Down
Head235 ± 114 of 4 0.70Down
Eye325 ± 154 of 4 0.97None
Thoracicoabdominal ganglion252 ± 154 of 4 0.80Down
Salivary gland376 ± 74 of 4 1.12Up
Crop303 ± 74 of 4 0.90Down
Midgut399 ± 44 of 4 1.20Up
Tubule365 ± 144 of 4 1.10Up
Hindgut219 ± 124 of 4 0.70Down
Heart291 ± 94 of 4 0.87Down
Fat body270 ± 184 of 4 0.81Down
Ovary456 ± 44 of 4 1.40Up
Testis338 ± 134 of 4 1.00None
Male accessory glands552 ± 364 of 4 1.60Up
Virgin spermatheca354 ± 84 of 4 1.06None
Mated spermatheca413 ± 234 of 4 1.23Up
Adult carcass231 ± 114 of 4 0.70Down
Larval CNS348 ± 244 of 4 1.04None
Larval Salivary gland472 ± 84 of 4 1.41Up
Larval midgut251 ± 64 of 4 0.75Down
Larval tubule205 ± 54 of 4 0.60Down
Larval hindgut196 ± 74 of 4 0.59Down
Larval fat body362 ± 234 of 4 1.10None
Larval trachea338 ± 334 of 4 1.01None
Larval carcass400 ± 314 of 4 1.19None
S2 cells (growing)594 ± 94 of 4 1.77Up
Whole fly334 ± 84 of 4

Looking for FBgn0051549. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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