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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051550 through 18771 annotations produced 1 hits



(CG31550):

Annotation Number : CG31550
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051550
Gbrowse : chr3R:1311253-1315216 (+) // 100.0 //
Probeset : 1633911_a_at
Accessions : protein= NP_001097688; /// NP_649544; /// NP_730937;, nucleotide= NM_001104218; /// NM_141287; /// NM_169056;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0051550.
BioGrid reports that CG31550 interacts with CG3162 CG9998 CG31764 CG3510 CG3798 CG3972 CG4818 CG6337 CG6933 CG7037 CG7626 CG8226 CG8597 CG9232 .
VDRC has 2 RNAi stocks for FBgn0051550 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain575 ± 344 of 4 5.00Up
Head137 ± 64 of 4 1.20Up
Eye182 ± 44 of 4 1.59Up
Thoracicoabdominal ganglion495 ± 204 of 4 4.30Up
Salivary gland189 ± 24 of 4 1.65Up
Crop208 ± 44 of 4 1.80Up
Midgut129 ± 84 of 4 1.10None
Tubule249 ± 104 of 4 2.20Up
Hindgut191 ± 24 of 4 1.70Up
Heart109 ± 54 of 4 0.96None
Fat body123 ± 34 of 4 1.08None
Ovary168 ± 24 of 4 1.50Up
Testis62 ± 14 of 4 0.50Down
Male accessory glands203 ± 94 of 4 1.80Up
Virgin spermatheca176 ± 94 of 4 1.54Up
Mated spermatheca177 ± 84 of 4 1.55Up
Adult carcass142 ± 74 of 4 1.20Up
Larval CNS273 ± 124 of 4 2.38Up
Larval Salivary gland166 ± 144 of 4 1.45Up
Larval midgut129 ± 74 of 4 1.13None
Larval tubule108 ± 44 of 4 0.90None
Larval hindgut156 ± 44 of 4 1.36Up
Larval fat body102 ± 94 of 4 0.90None
Larval trachea136 ± 94 of 4 1.19Up
Larval carcass141 ± 64 of 4 1.23Up
S2 cells (growing)236 ± 54 of 4 2.06Up
Whole fly114 ± 44 of 4

Looking for FBgn0051550. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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