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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051559 through 18771 annotations produced 1 hits



(CG31559):

Annotation Number : CG31559
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051559
Gbrowse : chr3R:1975836-1982949 (-) // 100.0 //
Probeset : 1633849_at
Accessions : protein= NP_731045;, nucleotide= NM_169127;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0009055 // electron carrier activity // inferred fr
FlyMine data for FBgn0051559.
BDGP gene expression has embryonic in situ data for CG31559: 12 pix of staining in 6 body parts.
VDRC has 2 RNAi stocks for FBgn0051559 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 10 of 4 0.60None
Head4 ± 10 of 4 0.40None
Eye2 ± 00 of 4 0.22Down
Thoracicoabdominal ganglion4 ± 20 of 4 0.40None
Salivary gland14 ± 40 of 4 1.26None
Crop12 ± 20 of 4 1.00None
Midgut15 ± 30 of 4 1.30None
Tubule4 ± 00 of 4 0.40Down
Hindgut13 ± 20 of 4 1.20None
Heart2 ± 10 of 4 0.19Down
Fat body9 ± 51 of 4 0.85None
Ovary5 ± 10 of 4 0.50None
Testis14 ± 14 of 4 1.30None
Male accessory glands8 ± 30 of 4 0.70None
Virgin spermatheca4 ± 10 of 4 0.39None
Mated spermatheca6 ± 10 of 4 0.51None
Adult carcass14 ± 30 of 4 1.20None
Larval CNS5 ± 20 of 4 0.50None
Larval Salivary gland6 ± 20 of 4 0.51None
Larval midgut10 ± 20 of 4 0.87None
Larval tubule7 ± 20 of 4 0.60None
Larval hindgut9 ± 10 of 4 0.83None
Larval fat body8 ± 10 of 4 0.70None
Larval trachea14 ± 32 of 4 1.25None
Larval carcass8 ± 00 of 4 0.71None
S2 cells (growing)7 ± 10 of 4 0.63None
Whole fly11 ± 21 of 4

Looking for FBgn0051559. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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