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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051560 through 18771 annotations produced 1 hits



(CG31560):

Annotation Number : CG31560
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051560
Gbrowse : chr3R:2135717-2136612 (+) // 100.0 //
Probeset : 1641112_at
Accessions : protein= NP_731067;, nucleotide= NM_169135;
FlyMine data for FBgn0051560.
VDRC has 3 RNAi stocks for FBgn0051560 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 1.00None
Head1 ± 00 of 4 0.30None
Eye1 ± 10 of 4 0.44None
Thoracicoabdominal ganglion2 ± 10 of 4 0.60None
Salivary gland17 ± 20 of 4 4.36Up
Crop5 ± 10 of 4 1.20None
Midgut3 ± 10 of 4 0.80None
Tubule5 ± 00 of 4 1.40Up
Hindgut1 ± 00 of 4 0.40None
Heart0 ± 00 of 4 0.22None
Fat body8 ± 60 of 4 1.99None
Ovary0 ± 00 of 4 0.20None
Testis1 ± 00 of 4 0.30None
Male accessory glands1 ± 00 of 4 0.40None
Virgin spermatheca14 ± 30 of 4 3.53Up
Mated spermatheca12 ± 40 of 4 3.09None
Adult carcass1 ± 00 of 4 0.50None
Larval CNS2 ± 10 of 4 0.54None
Larval Salivary gland1 ± 00 of 4 0.46None
Larval midgut0 ± 00 of 4 0.20None
Larval tubule1 ± 00 of 4 0.20None
Larval hindgut2 ± 00 of 4 0.51None
Larval fat body1 ± 00 of 4 0.50None
Larval trachea1 ± 10 of 4 0.40None
Larval carcass0 ± 00 of 4 0.15None
S2 cells (growing)1 ± 00 of 4 0.36None
Whole fly4 ± 10 of 4

Looking for FBgn0051560. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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