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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051562 through 18771 annotations produced 1 hits



(CG31562):

Annotation Number : CG31562
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051562
Gbrowse : chr3R:2010176-2011160 (+) // 100.0 //
Probeset : 1633275_at
Accessions : protein= NP_731049;, nucleotide= NM_169129;
FlyMine data for FBgn0051562.
BioGrid reports that CG31562 interacts with CG9291 .
VDRC has 2 RNAi stocks for FBgn0051562 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.70None
Head1 00 of 4 0.90None
Eye2 00 of 4 1.59None
Thoracicoabdominal ganglion1 00 of 4 1.30None
Salivary gland3 10 of 4 2.67None
Crop2 10 of 4 2.10None
Midgut1 00 of 4 1.20None
Tubule166 872 of 4123.00None
Hindgut1 00 of 4 1.00None
Heart1 00 of 4 1.04None
Fat body2 30 of 4 2.09None
Ovary0 00 of 4 0.70None
Testis0 00 of 4 0.60None
Male accessory glands3 10 of 4 2.70None
Virgin spermatheca3 10 of 4 2.70None
Mated spermatheca1 00 of 4 1.26None
Adult carcass2 00 of 4 1.90None
Larval CNS1 10 of 4 1.43None
Larval Salivary gland4 10 of 4 3.43None
Larval midgut2 00 of 4 2.00None
Larval tubule0 00 of 4 0.50None
Larval hindgut1 00 of 4 0.85None
Larval fat body2 00 of 4 2.10None
Larval trachea3 50 of 4 2.61None
Larval carcass2 00 of 4 1.80None
S2 cells (growing)0 00 of 4 0.61None
Whole fly1 00 of 4

Looking for FBgn0051562. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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