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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051606 through 18771 annotations produced 2 hits



(CG31606):

Annotation Number : CG31606
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051606
Gbrowse : chr2L:8147629-8148279 (+) // 100.0 //
Probeset : 1623765_at
Accessions : protein= NP_723348; /// NP_723349;, nucleotide= NM_164791; /// NM_164792;
FlyMine data for FBgn0051606.
VDRC has 3 RNAi stocks for FBgn0051606 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 2.50Up
Head4 ± 11 of 4 3.00None
Eye2 ± 00 of 4 1.26None
Thoracicoabdominal ganglion3 ± 11 of 4 2.40None
Salivary gland16 ± 20 of 410.26Up
Crop6 ± 02 of 4 4.20Up
Midgut4 ± 00 of 4 2.90Up
Tubule4 ± 00 of 4 2.80Up
Hindgut4 ± 11 of 4 2.70None
Heart10 ± 14 of 4 6.53Up
Fat body12 ± 42 of 4 7.30Up
Ovary3 ± 10 of 4 2.30None
Testis1 ± 00 of 4 1.00None
Male accessory glands4 ± 10 of 4 3.00None
Virgin spermatheca5 ± 20 of 4 3.30None
Mated spermatheca7 ± 10 of 4 4.23Up
Adult carcass7 ± 11 of 4 4.40Up
Larval CNS3 ± 00 of 4 2.03None
Larval Salivary gland3 ± 10 of 4 2.17None
Larval midgut3 ± 10 of 4 2.36None
Larval tubule3 ± 00 of 4 2.30None
Larval hindgut1 ± 00 of 4 1.06None
Larval fat body5 ± 10 of 4 3.20None
Larval trachea4 ± 30 of 4 2.79None
Larval carcass4 ± 00 of 4 2.58Up
S2 cells (growing)2 ± 00 of 4 1.79None
Whole fly1 ± 00 of 4



(CG31606):

Annotation Number : CG31606
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051606
Gbrowse : chr2L:8147629-8148279 (+) // 100.0 //
Probeset : 1625063_a_at
Accessions : protein= NP_723348; /// NP_723349;, nucleotide= NM_164791; /// NM_164792;
FlyMine data for FBgn0051606.
VDRC has 3 RNAi stocks for FBgn0051606 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.50None
Head13 ± 33 of 4 4.10Up
Eye2 ± 10 of 4 0.64None
Thoracicoabdominal ganglion2 ± 10 of 4 0.70None
Salivary gland5 ± 20 of 4 1.61None
Crop5 ± 00 of 4 1.70None
Midgut0 ± 00 of 4 0.20None
Tubule1 ± 00 of 4 0.50Down
Hindgut8 ± 00 of 4 2.70Up
Heart22 ± 24 of 4 7.12Up
Fat body33 ± 74 of 410.47Up
Ovary1 ± 00 of 4 0.40None
Testis1 ± 00 of 4 0.50None
Male accessory glands2 ± 10 of 4 0.90None
Virgin spermatheca42 ± 14 of 413.28Up
Mated spermatheca19 ± 33 of 4 6.16Up
Adult carcass16 ± 71 of 4 5.20None
Larval CNS0 ± 00 of 4 0.15None
Larval Salivary gland6 ± 30 of 4 2.13None
Larval midgut0 ± 00 of 4 0.19None
Larval tubule0 ± 00 of 4 0.20None
Larval hindgut3 ± 10 of 4 0.97None
Larval fat body4 ± 20 of 4 1.30None
Larval trachea3 ± 30 of 4 1.06None
Larval carcass1 ± 00 of 4 0.41None
S2 cells (growing)1 ± 00 of 4 0.33None
Whole fly3 ± 10 of 4

Looking for FBgn0051606. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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