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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051614 through 18771 annotations produced 1 hits



His1:CG31617 /// His1:CG33801 /// His1:CG33804 /// His1:CG33807 /// His1:CG33810 /// His1:CG33813 /// His1:CG33816 /// His1:CG33819 /// His1:CG33822 /// His1:CG33825 /// His1:CG33828 /// His1:CG33831 /// His1:CG33834 /// His1:CG33837 /// His1:CG33840 /// His1:CG33843 /// His1:CG33846 /// His1:CG33849 /// His1:CG33852 /// His1:CG33855 /// His1:CG33858 /// His1:CG33861 /// His1:CG33864 (His1:CG31617 /// His1:CG33801 /// His1:CG33804 /// His1:CG33807 /// His1:CG33810 /// His1:CG33813 /// His1:CG33816 /// His1:CG33819 /// His1:CG33822 /// His1:CG33825 /// His1:CG33828 /// His1:CG33831 /// His1:CG33834 /// His1:CG33837 /// His1:CG33840 /// His1:CG33843 /// His1:CG33846 /// His1:CG33849 /// His1:CG33852 /// His1:CG33855 /// His1:CG33858 /// His1:CG33861 /// His1:CG33864):

Annotation Number : CR31614
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051614 /// FBgn0051617 /// FBgn0053801 /// FBgn0053804 /// FBgn0053807 /// FBgn0053810 /// FBgn0053813 /// FBgn0053816 /// FBgn0053819 /// FBgn0053822 /// FBgn0053825 /// FBgn0053828 /// FBgn0053831 /// FBgn0053834 /// FBgn0053837 /// FBgn0053840 /// FBgn0053843 /// FBgn0053846 /// FBgn0053849 /// FBgn0053852 /// FBgn0053855 /// FBgn0053858 /// FBgn0053861 /// FBgn0053864
Gbrowse : chrUextra:10958515-11029897 (+) // 97.1 // /// chrUextra:18013913-18251413 (+) // 96.96 // /// chrUextra:17519559-17973946 (+) // 96.96 // /// chrUextra:10798897-11389772 (+) // 97.1 // /// chr2L:21542983-21543706 (+) // 100.0 // /// chr2L:21437130-21437835 (+) // 97.1 // /// chr2L:21456232-21456937 (+) // 97.1 // /// chr2L:21461292-21461997 (+) // 97.1 // /// chr2L:21466335-21467040 (+) // 97.1 // /// chr2L:21471378-21472083 (+) // 97.1 // /// chr2L:21476421-21477126 (+) // 97.1 // /// chr2L:21481464-21482169 (+) // 97.1 // /// chr2L:21521735-21522440 (+) // 97.1 // /// chr2L:21526578-21527283 (+) // 97.1 // /// chr2L:21531421-21532126 (+) // 97.1 // /// chr2L:21421974-21422679 (+) // 96.96 // /// chr2L:21427035-21427740 (+) // 96.96 // /// chr2L:21451171-21451876 (+) // 96.96 // /// chrUextra:12271498-12279438 (-) // 97.1 // /// chrUextra:16984489-17104264 (-) // 97.1 //
Probeset : 1631321_s_at
Accessions : protein= NP_001027282; /// NP_001027286; /// NP_001027290; /// NP_001027295; /// NP_001027299; /// NP_001027304; /// NP_001027309; /// NP_001027314; /// NP_001027319; /// NP_001027324; /// NP_001027329; /// NP_001027334; /// NP_001027339; /// NP_001027344; /// NP_001027349; /// NP_001027354; /// NP_001027359; /// NP_001027364; /// NP_001027369; /// NP_001027374; /// NP_001027379; /// NP_001027384; /// NP_724341;, nucleotide= NM_001032111; /// NM_001032115; /// NM_001032119; /// NM_001032124; /// NM_001032128; /// NM_001032133; /// NM_001032138; /// NM_001032143; /// NM_001032148; /// NM_001032153; /// NM_001032158; /// NM_001032163; /// NM_001032168; /// NM_001032173; /// NM_001032178; /// NM_001032183; /// NM_001032188; /// NM_001032193; /// NM_001032198; /// NM_001032203; /// NM_001032208; /// NM_001032213; /// NM_165380;
Pathway : 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structu
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from el
FlyMine data for FBgn0051614 /// FBgn0051617 /// FBgn0053801 /// FBgn0053804 /// FBgn0053807 /// FBgn0053810 /// FBgn0053813 /// FBgn0053816 /// FBgn0053819 /// FBgn0053822 /// FBgn0053825 /// FBgn0053828 /// FBgn0053831 /// FBgn0053834 /// FBgn0053837 /// FBgn0053840 /// FBgn0053843 /// FBgn0053846 /// FBgn0053849 /// FBgn0053852 /// FBgn0053855 /// FBgn0053858 /// FBgn0053861 /// FBgn0053864.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain227 ± 294 of 4 0.30Down
Head146 ± 344 of 4 0.20Down
Eye32 ± 24 of 4 0.05Down
Thoracicoabdominal ganglion82 ± 204 of 4 0.10Down
Salivary gland458 ± 384 of 4 0.68None
Crop240 ± 744 of 4 0.40Down
Midgut108 ± 24 of 4 0.20Down
Tubule99 ± 34 of 4 0.10Down
Hindgut236 ± 164 of 4 0.40Down
Heart33 ± 54 of 4 0.05Down
Fat body316 ± 1674 of 4 0.47Down
Ovary1340 ± 604 of 4 2.00Up
Testis40 ± 54 of 4 0.10Down
Male accessory glands254 ± 734 of 4 0.40Down
Virgin spermatheca278 ± 274 of 4 0.41Down
Mated spermatheca297 ± 894 of 4 0.44Down
Adult carcass57 ± 63 of 4 0.10Down
Larval CNS290 ± 554 of 4 0.43Down
Larval Salivary gland215 ± 214 of 4 0.32Down
Larval midgut50 ± 54 of 4 0.08Down
Larval tubule119 ± 134 of 4 0.20Down
Larval hindgut95 ± 174 of 4 0.14Down
Larval fat body83 ± 34 of 4 0.10Down
Larval trachea45 ± 44 of 4 0.07Down
Larval carcass71 ± 124 of 4 0.11Down
S2 cells (growing)431 ± 274 of 4 0.64None
Whole fly674 ± 814 of 4

Looking for FBgn0051614. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime