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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0051627 through 18771 annotations produced 1 hits


Annotation Number : CG31627
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051627
Gbrowse : chr2L:21173283-21173854 (+) // 100.0 //
Probeset : 1636756_at
Accessions : protein= NP_724314;, nucleotide= NM_165357;
FlyMine data for FBgn0051627.
VDRC has 2 RNAi stocks for FBgn0051627 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain38 04 of 4 0.80Down
Head11 14 of 4 0.20Down
Eye3 00 of 4 0.07Down
Thoracicoabdominal ganglion48 34 of 4 1.00None
Salivary gland22 24 of 4 0.47Down
Crop12 24 of 4 0.30Down
Midgut12 22 of 4 0.30Down
Tubule8 01 of 4 0.20Down
Hindgut7 11 of 4 0.20Down
Heart4 10 of 4 0.09Down
Fat body10 24 of 4 0.21Down
Ovary4 01 of 4 0.10Down
Testis507 204 of 410.50Up
Male accessory glands12 11 of 4 0.30Down
Virgin spermatheca11 14 of 4 0.24Down
Mated spermatheca10 23 of 4 0.22Down
Adult carcass13 32 of 4 0.30Down
Larval CNS15 34 of 4 0.31Down
Larval Salivary gland7 21 of 4 0.14Down
Larval midgut11 03 of 4 0.23Down
Larval tubule9 21 of 4 0.20Down
Larval hindgut7 13 of 4 0.15Down
Larval fat body54 253 of 4 1.10None
Larval trachea4 31 of 4 0.10Down
Larval carcass5 10 of 4 0.11Down
S2 cells (growing)9 04 of 4 0.20Down
Whole fly48 14 of 4

Looking for FBgn0051627. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime