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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051638 through 18771 annotations produced 1 hits



(CG31638):

Annotation Number : CG31638
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051638
Gbrowse : chr2L:6491121-6496120 (+) // 100.0 //
Probeset : 1636437_at
Accessions : protein= NP_001097099; /// NP_723186;, nucleotide= NM_001103629; /// NM_164692;
Pathway : 0016459 // myosin complex // inferred from sequence or structural similarity
FlyMine data for FBgn0051638.
BioGrid reports that CG31638 interacts with CG3572 CG4865 .
VDRC has 3 RNAi stocks for FBgn0051638 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain90 14 of 4 6.40Up
Head27 54 of 4 1.90None
Eye24 14 of 4 1.77Up
Thoracicoabdominal ganglion54 34 of 4 3.80Up
Salivary gland13 21 of 4 0.96None
Crop12 23 of 4 0.90None
Midgut15 24 of 4 1.10None
Tubule13 02 of 4 1.00None
Hindgut12 13 of 4 0.90None
Heart10 24 of 4 0.77None
Fat body10 33 of 4 0.76None
Ovary6 02 of 4 0.50Down
Testis17 04 of 4 1.30None
Male accessory glands4 10 of 4 0.30Down
Virgin spermatheca3 10 of 4 0.24Down
Mated spermatheca7 10 of 4 0.56Down
Adult carcass13 31 of 4 1.00None
Larval CNS46 54 of 4 3.29Up
Larval Salivary gland9 12 of 4 0.66None
Larval midgut13 33 of 4 0.96None
Larval tubule12 22 of 4 0.90None
Larval hindgut12 14 of 4 0.91None
Larval fat body10 10 of 4 0.70None
Larval trachea10 14 of 4 0.78None
Larval carcass12 14 of 4 0.89None
S2 cells (growing)28 14 of 4 2.00Up
Whole fly14 14 of 4

Looking for FBgn0051638. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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