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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051648 through 18771 annotations produced 1 hits



Complex IV assembly protein COX11 (CG31648):

Annotation Number : CG31648
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051648
Gbrowse : chr2L:5526962-5527800 (+) // 100.0 //
Probeset : 1638621_at
Accessions : protein= NP_723086;, nucleotide= NM_164644;
Pathway : 0005743 // mitochondrial inner membrane // inferred from sequence or structural similarity
Interpro : 0005507 // copper ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from phy
FlyMine data for FBgn0051648.
BioGrid reports that CG31648 interacts with CG7889 .
VDRC has 3 RNAi stocks for FBgn0051648 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain54 ± 14 of 4 0.80Down
Head58 ± 34 of 4 0.80Down
Eye55 ± 34 of 4 0.75Down
Thoracicoabdominal ganglion76 ± 54 of 4 1.00None
Salivary gland68 ± 64 of 4 0.94None
Crop77 ± 24 of 4 1.10None
Midgut92 ± 54 of 4 1.30Up
Tubule77 ± 14 of 4 1.10Up
Hindgut79 ± 04 of 4 1.10None
Heart77 ± 64 of 4 1.06None
Fat body75 ± 94 of 4 1.03None
Ovary136 ± 44 of 4 1.90Up
Testis22 ± 04 of 4 0.30Down
Male accessory glands58 ± 44 of 4 0.80Down
Virgin spermatheca64 ± 34 of 4 0.88None
Mated spermatheca54 ± 44 of 4 0.75Down
Adult carcass91 ± 24 of 4 1.20Up
Larval CNS59 ± 74 of 4 0.82Down
Larval Salivary gland50 ± 44 of 4 0.69Down
Larval midgut70 ± 54 of 4 0.97None
Larval tubule69 ± 14 of 4 0.90None
Larval hindgut85 ± 64 of 4 1.16None
Larval fat body52 ± 54 of 4 0.70Down
Larval trachea64 ± 54 of 4 0.88None
Larval carcass71 ± 34 of 4 0.97None
S2 cells (growing)175 ± 64 of 4 2.41Up
Whole fly73 ± 34 of 4

Looking for FBgn0051648. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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