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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051658 through 18771 annotations produced 1 hits



CG31658 (Nnf1b):

Annotation Number : CG31658
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051658
Gbrowse : chr2L:810645-811432 (+) // 100.0 //
Probeset : 1638348_at
Accessions : protein= NP_722652;, nucleotide= NM_164388;
Pathway : 0000776 // kinetochore // inferred from direct assay /// 0031262 // Ndc80 complex // inferred from direct assay /// 0031
FlyMine data for FBgn0051658.
VDRC has 2 RNAi stocks for FBgn0051658 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.10Down
Head3 ± 10 of 4 0.10Down
Eye1 ± 00 of 4 0.06Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.10Down
Salivary gland2 ± 00 of 4 0.08Down
Crop5 ± 10 of 4 0.10Down
Midgut16 ± 14 of 4 0.50Down
Tubule3 ± 00 of 4 0.10Down
Hindgut6 ± 11 of 4 0.20Down
Heart1 ± 00 of 4 0.06Down
Fat body4 ± 20 of 4 0.13Down
Ovary98 ± 34 of 4 2.90Up
Testis20 ± 24 of 4 0.60None
Male accessory glands3 ± 00 of 4 0.10Down
Virgin spermatheca1 ± 00 of 4 0.03Down
Mated spermatheca3 ± 10 of 4 0.09Down
Adult carcass9 ± 20 of 4 0.30Down
Larval CNS39 ± 34 of 4 1.16None
Larval Salivary gland5 ± 20 of 4 0.16Down
Larval midgut4 ± 20 of 4 0.14Down
Larval tubule6 ± 10 of 4 0.20Down
Larval hindgut5 ± 21 of 4 0.15Down
Larval fat body5 ± 10 of 4 0.20Down
Larval trachea21 ± 34 of 4 0.63None
Larval carcass10 ± 13 of 4 0.32Down
S2 cells (growing)102 ± 24 of 4 3.04Up
Whole fly33 ± 44 of 4

Looking for FBgn0051658. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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