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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0051661 through 18771 annotations produced 1 hits

aspartic-type endopeptidase (CG31661):

Annotation Number : CG31661
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051661
Gbrowse : chr2L:1497253-1498435 (+) // 100.0 //
Probeset : 1633182_at
Accessions : protein= NP_722707;, nucleotide= NM_164420;
Interpro : 0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation /// 0004190 // aspartic-type endo
FlyMine data for FBgn0051661.
Homophila reports that CG31661 is a close match (1e-37) to human gene REN (NP_000528), a gene associated with Renal tubular dysgenesis, 267430 (3);[Hyperproreninemia] (3).
VDRC has 2 RNAi stocks for FBgn0051661 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.10Down
Head4 00 of 4 0.10Down
Eye2 00 of 4 0.05Down
Thoracicoabdominal ganglion6 20 of 4 0.10Down
Salivary gland11 10 of 4 0.20Down
Crop5 00 of 4 0.10Down
Midgut1 00 of 4 0.00Down
Tubule5 00 of 4 0.10Down
Hindgut4 10 of 4 0.10Down
Heart5 10 of 4 0.10Down
Fat body7 30 of 4 0.12Down
Ovary128 94 of 4 2.30Up
Testis2 00 of 4 0.00Down
Male accessory glands8 21 of 4 0.10Down
Virgin spermatheca5 11 of 4 0.10Down
Mated spermatheca3 10 of 4 0.06Down
Adult carcass12 31 of 4 0.20Down
Larval CNS4 01 of 4 0.07Down
Larval Salivary gland2 10 of 4 0.04Down
Larval midgut2 10 of 4 0.04Down
Larval tubule4 10 of 4 0.10Down
Larval hindgut2 00 of 4 0.05Down
Larval fat body5 20 of 4 0.10Down
Larval trachea4 10 of 4 0.07Down
Larval carcass1 00 of 4 0.02Down
S2 cells (growing)2 10 of 4 0.04Down
Whole fly56 84 of 4

Looking for FBgn0051661. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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