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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0051663 through 18771 annotations produced 1 hits


Annotation Number : CG31663
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051663
Gbrowse : chr2L:1858608-1880644 (-) // 100.0 //
Probeset : 1623276_at
Accessions : protein= NP_722738;, nucleotide= NM_164444;
FlyMine data for FBgn0051663.
BDGP gene expression has embryonic in situ data for CG31663: 12 pix of staining in 4 body parts.
VDRC has 3 RNAi stocks for FBgn0051663 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain548 194 of 415.10Up
Head178 104 of 4 4.90Up
Eye43 14 of 4 1.21None
Thoracicoabdominal ganglion856 284 of 423.60Up
Salivary gland18 70 of 4 0.52None
Crop5 10 of 4 0.20Down
Midgut13 30 of 4 0.40Down
Tubule1365 1454 of 437.60Up
Hindgut19 21 of 4 0.50Down
Heart4 11 of 4 0.13Down
Fat body26 62 of 4 0.74None
Ovary3 10 of 4 0.10Down
Testis36 14 of 4 1.00None
Male accessory glands12 51 of 4 0.30Down
Virgin spermatheca20 32 of 4 0.57Down
Mated spermatheca16 40 of 4 0.46Down
Adult carcass42 34 of 4 1.20None
Larval CNS227 174 of 4 6.28Up
Larval Salivary gland6 30 of 4 0.18Down
Larval midgut20 31 of 4 0.58Down
Larval tubule315 124 of 4 8.70Up
Larval hindgut11 00 of 4 0.32Down
Larval fat body13 41 of 4 0.40Down
Larval trachea8 30 of 4 0.22Down
Larval carcass27 00 of 4 0.75None
S2 cells (growing)3 10 of 4 0.11Down
Whole fly36 44 of 4

Looking for FBgn0051663. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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