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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051664 through 18771 annotations produced 1 hits



(CG31664):

Annotation Number : CG31664
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051664
Gbrowse : chr2L:1824403-1826055 (-) // 100.0 //
Probeset : 1638139_at
Accessions : protein= NP_722735;, nucleotide= NM_164442;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic anno
Interpro : 0003735 // structural constituent of ribosome // inferred from electronic annotation
FlyMine data for FBgn0051664.
VDRC has 3 RNAi stocks for FBgn0051664 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 10 of 4 0.50Down
Head152 104 of 4 7.80Up
Eye52 104 of 4 2.67Up
Thoracicoabdominal ganglion9 10 of 4 0.50Down
Salivary gland9 40 of 4 0.46None
Crop7 30 of 4 0.40Down
Midgut4 10 of 4 0.20Down
Tubule9 10 of 4 0.50Down
Hindgut6 10 of 4 0.30Down
Heart30 34 of 4 1.56None
Fat body104 114 of 4 5.32Up
Ovary3 10 of 4 0.20Down
Testis8 00 of 4 0.40Down
Male accessory glands2 00 of 4 0.10Down
Virgin spermatheca112 64 of 4 5.74Up
Mated spermatheca47 54 of 4 2.42Up
Adult carcass62 74 of 4 3.20Up
Larval CNS4 10 of 4 0.22Down
Larval Salivary gland7 20 of 4 0.36Down
Larval midgut6 10 of 4 0.31Down
Larval tubule4 20 of 4 0.20Down
Larval hindgut11 23 of 4 0.57None
Larval fat body40 74 of 4 2.10None
Larval trachea3 21 of 4 0.16Down
Larval carcass6 10 of 4 0.31Down
S2 cells (growing)3 10 of 4 0.18Down
Whole fly19 33 of 4

Looking for FBgn0051664. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime