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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051676 through 18771 annotations produced 1 hits



(CG31676):

Annotation Number : CG31676
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051676
Gbrowse : chr2L:20840799-20849182 (+) // 100.0 //
Probeset : 1630255_at
Accessions : protein= NP_652593;, nucleotide= NM_144336;
FlyMine data for FBgn0051676.
BDGP gene expression has embryonic in situ data for CG31676: 28 pix of staining in 6 body parts.
TRiP has 1 RNAi stocks for FBgn0051676 available for purchase.
VDRC has 2 RNAi stocks for FBgn0051676 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain455 ± 114 of 4 4.00Up
Head438 ± 94 of 4 3.90Up
Eye77 ± 74 of 4 0.68Down
Thoracicoabdominal ganglion1001 ± 364 of 4 8.80Up
Salivary gland17 ± 51 of 4 0.15Down
Crop1663 ± 614 of 414.70Up
Midgut43 ± 34 of 4 0.40Down
Tubule40 ± 74 of 4 0.40Down
Hindgut931 ± 54 of 4 8.20Up
Heart32 ± 44 of 4 0.29Down
Fat body26 ± 64 of 4 0.23Down
Ovary15 ± 14 of 4 0.10Down
Testis77 ± 34 of 4 0.70Down
Male accessory glands647 ± 234 of 4 5.70Up
Virgin spermatheca39 ± 24 of 4 0.35Down
Mated spermatheca61 ± 74 of 4 0.54Down
Adult carcass247 ± 174 of 4 2.20Up
Larval CNS67 ± 184 of 4 0.59Down
Larval Salivary gland2 ± 00 of 4 0.02Down
Larval midgut9 ± 10 of 4 0.09Down
Larval tubule6 ± 20 of 4 0.10Down
Larval hindgut1121 ± 974 of 4 9.88Up
Larval fat body99 ± 94 of 4 0.90None
Larval trachea60 ± 174 of 4 0.53Down
Larval carcass42 ± 74 of 4 0.37Down
S2 cells (growing)3 ± 10 of 4 0.03Down
Whole fly113 ± 84 of 4

Looking for FBgn0051676. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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