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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051678 through 18771 annotations produced 1 hits



(CG31678):

Annotation Number : CG31678
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051678
Gbrowse : chr2L:20659129-20675941 (-) // 100.0 //
Probeset : 1640130_at
Accessions : protein= NP_001137844; /// NP_724277;, nucleotide= NM_001144372; /// NM_165336;
FlyMine data for FBgn0051678.
VDRC has 2 RNAi stocks for FBgn0051678 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain753 474 of 4 4.20Up
Head340 44 of 4 1.90Up
Eye296 264 of 4 1.67Up
Thoracicoabdominal ganglion939 574 of 4 5.30Up
Salivary gland410 264 of 4 2.31Up
Crop144 54 of 4 0.80Down
Midgut164 104 of 4 0.90None
Tubule253 94 of 4 1.40Up
Hindgut219 114 of 4 1.20Up
Heart154 104 of 4 0.87None
Fat body112 104 of 4 0.63Down
Ovary309 64 of 4 1.70Up
Testis113 44 of 4 0.60Down
Male accessory glands457 174 of 4 2.60Up
Virgin spermatheca101 24 of 4 0.57Down
Mated spermatheca130 54 of 4 0.74Down
Adult carcass135 44 of 4 0.80Down
Larval CNS220 124 of 4 1.24Up
Larval Salivary gland440 374 of 4 2.48Up
Larval midgut145 74 of 4 0.82Down
Larval tubule419 164 of 4 2.40Up
Larval hindgut154 34 of 4 0.87Down
Larval fat body210 54 of 4 1.20Up
Larval trachea146 64 of 4 0.82Down
Larval carcass130 44 of 4 0.74Down
S2 cells (growing)409 94 of 4 2.30Up
Whole fly177 64 of 4

Looking for FBgn0051678. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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