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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051690 through 18771 annotations produced 1 hits



(CG31690):

Annotation Number : CG31690
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051690
Gbrowse : chr2L:2674824-2719435 (+) // 100.0 //
Probeset : 1626238_at
Accessions : protein= NP_722826; /// NP_995615;, nucleotide= NM_164492; /// NM_205893;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005488 // binding // inferred from electronic annotation /// 0016262 // protein N-acetylglucosaminyltransferase activit
FlyMine data for FBgn0051690.
VDRC has 2 RNAi stocks for FBgn0051690 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain133 84 of 416.30Up
Head31 44 of 4 3.80Up
Eye17 02 of 4 2.08Up
Thoracicoabdominal ganglion81 74 of 410.00Up
Salivary gland4 10 of 4 0.58None
Crop6 20 of 4 0.80None
Midgut10 20 of 4 1.30None
Tubule8 00 of 4 1.10None
Hindgut8 21 of 4 1.10None
Heart2 10 of 4 0.36Down
Fat body6 30 of 4 0.73None
Ovary2 00 of 4 0.30Down
Testis7 11 of 4 0.90None
Male accessory glands22 11 of 4 2.70Up
Virgin spermatheca12 10 of 4 1.51None
Mated spermatheca14 00 of 4 1.79Up
Adult carcass25 31 of 4 3.10Up
Larval CNS49 64 of 4 5.98Up
Larval Salivary gland1 00 of 4 0.23Down
Larval midgut11 31 of 4 1.36None
Larval tubule9 20 of 4 1.10None
Larval hindgut6 11 of 4 0.74None
Larval fat body2 00 of 4 0.30Down
Larval trachea4 21 of 4 0.61None
Larval carcass1 00 of 4 0.23Down
S2 cells (growing)6 10 of 4 0.76None
Whole fly8 11 of 4

Looking for FBgn0051690. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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