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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051693 through 18771 annotations produced 1 hits



(CG31693):

Annotation Number : CG31693
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051693
Gbrowse : chr2L:22015240-22017334 (+) // 100.0 //
Probeset : 1631654_at
Accessions : protein= NP_001033933; /// NP_724369;, nucleotide= NM_001038844; /// NM_165402;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from sequence or structural similarity /// 0015137 // citrate transmembrane
FlyMine data for FBgn0051693.
BDGP gene expression has embryonic in situ data for CG31693: 4 pix of staining in 1 body parts.
Homophila reports that CG31693 is a close match (4e-63) to human gene BOCA;D15S12;EYCL3;HCL3;OCA2;P;PED;SHEP1 (NP_000266), a gene associated with Albinism, brown oculocutaneous, 203200 (3);Albinism, oculocutaneous, type II, 203200 (3);[Skin/hair/eye pigmentation 1, blond/brown hair], 227220 (3);[Skin/hair/eye pigmentation 1, blue/nonblue eyes], 227220 (3).
VDRC has 3 RNAi stocks for FBgn0051693 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye0 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.00Down
Salivary gland5 ± 20 of 4 0.10Down
Crop3 ± 10 of 4 0.10Down
Midgut4 ± 20 of 4 0.10Down
Tubule4 ± 10 of 4 0.10Down
Hindgut3 ± 20 of 4 0.10Down
Heart3 ± 10 of 4 0.06Down
Fat body3 ± 30 of 4 0.06Down
Ovary0 ± 00 of 4 0.00Down
Testis769 ± 324 of 413.10Up
Male accessory glands7 ± 20 of 4 0.10Down
Virgin spermatheca4 ± 10 of 4 0.08Down
Mated spermatheca7 ± 20 of 4 0.13Down
Adult carcass7 ± 30 of 4 0.10Down
Larval CNS1 ± 10 of 4 0.03Down
Larval Salivary gland3 ± 10 of 4 0.05Down
Larval midgut2 ± 10 of 4 0.05Down
Larval tubule2 ± 00 of 4 0.00Down
Larval hindgut3 ± 10 of 4 0.06Down
Larval fat body39 ± 221 of 4 0.70None
Larval trachea1 ± 10 of 4 0.03Down
Larval carcass4 ± 10 of 4 0.08Down
S2 cells (growing)2 ± 10 of 4 0.04Down
Whole fly58 ± 44 of 4

Looking for FBgn0051693. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime