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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051704 through 18771 annotations produced 1 hits



(CG31704):

Annotation Number : CG31704
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051704
Gbrowse : chr2L:11840711-11840918 (+) // 100.0 //
Probeset : 1623540_at
Accessions : protein= NP_723689;, nucleotide= NM_164973;
Interpro : 0004867 // serine-type endopeptidase inhibitor activity // inferred from sequence or structural similarity /// 0004867 /
FlyMine data for FBgn0051704.
VDRC has 4 RNAi stocks for FBgn0051704 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 10 of 4 0.00Down
Head222 ± 264 of 4 0.70Down
Eye64 ± 74 of 4 0.20Down
Thoracicoabdominal ganglion6 ± 20 of 4 0.00Down
Salivary gland62 ± 160 of 4 0.19Down
Crop12 ± 20 of 4 0.00Down
Midgut678 ± 414 of 4 2.10Up
Tubule11 ± 10 of 4 0.00Down
Hindgut163 ± 54 of 4 0.50Down
Heart42 ± 64 of 4 0.13Down
Fat body42 ± 80 of 4 0.13Down
Ovary3 ± 10 of 4 0.00Down
Testis25 ± 44 of 4 0.10Down
Male accessory glands2370 ± 1574 of 4 7.30Up
Virgin spermatheca75 ± 64 of 4 0.23Down
Mated spermatheca82 ± 94 of 4 0.26Down
Adult carcass197 ± 214 of 4 0.60Down
Larval CNS2 ± 10 of 4 0.01Down
Larval Salivary gland786 ± 574 of 4 2.43Up
Larval midgut44 ± 64 of 4 0.14Down
Larval tubule9 ± 30 of 4 0.00Down
Larval hindgut25 ± 30 of 4 0.08Down
Larval fat body10 ± 30 of 4 0.00Down
Larval trachea10 ± 70 of 4 0.03Down
Larval carcass7 ± 00 of 4 0.02Down
S2 cells (growing)3 ± 00 of 4 0.01Down
Whole fly323 ± 154 of 4

Looking for FBgn0051704. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime