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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051706 through 18771 annotations produced 1 hits



(CG31706):

Annotation Number : CG31706
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051706
Gbrowse : chr2L:11529520-11531049 (-) // 100.0 //
Probeset : 1632203_at
Accessions : protein= NP_723675;, nucleotide= NM_164969;
FlyMine data for FBgn0051706.
BDGP gene expression has embryonic in situ data for CG31706: 6 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0051706 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1773 ± 254 of 445.50Up
Head839 ± 124 of 421.60Up
Eye145 ± 114 of 4 3.75Up
Thoracicoabdominal ganglion1128 ± 264 of 429.00Up
Salivary gland8 ± 10 of 4 0.23Down
Crop7 ± 30 of 4 0.20Down
Midgut3 ± 10 of 4 0.10Down
Tubule3 ± 00 of 4 0.10Down
Hindgut3 ± 10 of 4 0.10Down
Heart2 ± 00 of 4 0.08Down
Fat body6 ± 50 of 4 0.17Down
Ovary0 ± 00 of 4 0.00Down
Testis6 ± 12 of 4 0.20Down
Male accessory glands5 ± 20 of 4 0.10Down
Virgin spermatheca4 ± 10 of 4 0.12Down
Mated spermatheca1 ± 00 of 4 0.05Down
Adult carcass19 ± 22 of 4 0.50Down
Larval CNS379 ± 544 of 4 9.74Up
Larval Salivary gland2 ± 10 of 4 0.07Down
Larval midgut4 ± 10 of 4 0.12Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.02Down
Larval fat body2 ± 00 of 4 0.10Down
Larval trachea5 ± 30 of 4 0.15Down
Larval carcass3 ± 10 of 4 0.09Down
S2 cells (growing)1 ± 00 of 4 0.04Down
Whole fly39 ± 04 of 4

Looking for FBgn0051706. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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