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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051709 through 18771 annotations produced 1 hits



(CG31709):

Annotation Number : CG31709
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051709
Gbrowse : chr2L:9578535-9579638 (-) // 100.0 //
Probeset : 1640759_at
Accessions : protein= NP_723472;, nucleotide= NM_164862;
FlyMine data for FBgn0051709.
VDRC has 3 RNAi stocks for FBgn0051709 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye0 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland5 ± 30 of 4 0.02Down
Crop3 ± 00 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule3 ± 10 of 4 0.00Down
Hindgut2 ± 00 of 4 0.00Down
Heart3 ± 00 of 4 0.01Down
Fat body14 ± 103 of 4 0.05Down
Ovary2 ± 00 of 4 0.00Down
Testis2445 ± 1184 of 4 8.70Up
Male accessory glands3 ± 20 of 4 0.00Down
Virgin spermatheca18 ± 24 of 4 0.06Down
Mated spermatheca17 ± 63 of 4 0.06Down
Adult carcass7 ± 21 of 4 0.00Down
Larval CNS10 ± 53 of 4 0.04Down
Larval Salivary gland1 ± 00 of 4 0.01Down
Larval midgut1 ± 00 of 4 0.00Down
Larval tubule2 ± 10 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.01Down
Larval fat body443 ± 2454 of 4 1.60None
Larval trachea11 ± 201 of 4 0.04Down
Larval carcass2 ± 01 of 4 0.01Down
S2 cells (growing)1 ± 10 of 4 0.00Down
Whole fly281 ± 414 of 4

Looking for FBgn0051709. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime