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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051712 through 18771 annotations produced 1 hits



(CG31712):

Annotation Number : CG31712
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051712
Gbrowse : chr2L:9934748-9938142 (-) // 100.0 //
Probeset : 1638819_at
Accessions : protein= NP_609327;, nucleotide= NM_135483;
FlyMine data for FBgn0051712.
VDRC has 2 RNAi stocks for FBgn0051712 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain585 234 of 4 8.40Up
Head87 34 of 4 1.20Up
Eye363 24 of 4 5.18Up
Thoracicoabdominal ganglion549 264 of 4 7.80Up
Salivary gland424 154 of 4 6.06Up
Crop98 24 of 4 1.40Up
Midgut89 24 of 4 1.30Up
Tubule93 54 of 4 1.30Up
Hindgut96 54 of 4 1.40Up
Heart110 64 of 4 1.58Up
Fat body97 194 of 4 1.39None
Ovary113 24 of 4 1.60Up
Testis88 34 of 4 1.30Up
Male accessory glands206 44 of 4 2.90Up
Virgin spermatheca108 54 of 4 1.55Up
Mated spermatheca116 114 of 4 1.67Up
Adult carcass67 54 of 4 1.00None
Larval CNS324 194 of 4 4.63Up
Larval Salivary gland314 174 of 4 4.48Up
Larval midgut79 64 of 4 1.13None
Larval tubule81 44 of 4 1.20None
Larval hindgut97 44 of 4 1.38Up
Larval fat body77 34 of 4 1.10None
Larval trachea212 124 of 4 3.03Up
Larval carcass76 44 of 4 1.10None
S2 cells (growing)164 44 of 4 2.35Up
Whole fly70 34 of 4

Looking for FBgn0051712. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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