FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0051712 through 18771 annotations produced 1 hits

(CG31712):

Annotation Number : CG31712
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051712
Gbrowse : chr2L:9934748-9938142 (-) // 100.0 //
Probeset : 1638819_at
Accessions : protein= NP_609327;, nucleotide= NM_135483;
FlyMine data for FBgn0051712.
VDRC has 2 RNAi stocks for FBgn0051712 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	585 ± 23	4 of 4	8.40	Up
Head	87 ± 3	4 of 4	1.20	Up
Eye	363 ± 2	4 of 4	5.18	Up
Thoracicoabdominal ganglion	549 ± 26	4 of 4	7.80	Up
Salivary gland	424 ± 15	4 of 4	6.06	Up
Crop	98 ± 2	4 of 4	1.40	Up
Midgut	89 ± 2	4 of 4	1.30	Up
Tubule	93 ± 5	4 of 4	1.30	Up
Hindgut	96 ± 5	4 of 4	1.40	Up
Heart	110 ± 6	4 of 4	1.58	Up
Fat body	97 ± 19	4 of 4	1.39	None
Ovary	113 ± 2	4 of 4	1.60	Up
Testis	88 ± 3	4 of 4	1.30	Up
Male accessory glands	206 ± 4	4 of 4	2.90	Up
Virgin spermatheca	108 ± 5	4 of 4	1.55	Up
Mated spermatheca	116 ± 11	4 of 4	1.67	Up
Adult carcass	67 ± 5	4 of 4	1.00	None
Larval CNS	324 ± 19	4 of 4	4.63	Up
Larval Salivary gland	314 ± 17	4 of 4	4.48	Up
Larval midgut	79 ± 6	4 of 4	1.13	None
Larval tubule	81 ± 4	4 of 4	1.20	None
Larval hindgut	97 ± 4	4 of 4	1.38	Up
Larval fat body	77 ± 3	4 of 4	1.10	None
Larval trachea	212 ± 12	4 of 4	3.03	Up
Larval carcass	76 ± 4	4 of 4	1.10	None
S2 cells (growing)	164 ± 4	4 of 4	2.35	Up
Whole fly	70 ± 3	4 of 4

Looking for FBgn0051712. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720