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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051716 through 18771 annotations produced 1 hits



(CG31716):

Annotation Number : CG31716
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051716
Gbrowse : chr2L:10396710-10402885 (+) // 100.0 //
Probeset : 1626673_s_at
Accessions : protein= NP_723578; /// NP_723579; /// NP_723580; /// NP_723581; /// NP_723582; /// NP_723583;, nucleotide= NM_164919; /// NM_164920; /// NM_164921; /// NM_164922; /// NM_164923; /// NM_164924;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0051716.
BDGP gene expression has embryonic in situ data for CG31716: 6 pix of staining in 1 body parts.
BioGrid reports that CG31716 interacts with CG4835 .
TRiP has 2 RNAi stocks for FBgn0051716 available for purchase.
VDRC has 2 RNAi stocks for FBgn0051716 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain652 184 of 4 1.60Up
Head401 94 of 4 1.00None
Eye377 24 of 4 0.91Down
Thoracicoabdominal ganglion656 104 of 4 1.60Up
Salivary gland520 64 of 4 1.26Up
Crop487 44 of 4 1.20Up
Midgut235 124 of 4 0.60Down
Tubule242 44 of 4 0.60Down
Hindgut335 64 of 4 0.80Down
Heart243 74 of 4 0.59Down
Fat body232 154 of 4 0.56Down
Ovary745 74 of 4 1.80Up
Testis443 64 of 4 1.10Up
Male accessory glands403 104 of 4 1.00None
Virgin spermatheca398 114 of 4 0.96None
Mated spermatheca363 204 of 4 0.88None
Adult carcass306 124 of 4 0.70Down
Larval CNS379 164 of 4 0.92Down
Larval Salivary gland535 194 of 4 1.29Up
Larval midgut228 124 of 4 0.55Down
Larval tubule345 114 of 4 0.80Down
Larval hindgut325 94 of 4 0.79Down
Larval fat body418 184 of 4 1.00None
Larval trachea379 324 of 4 0.92None
Larval carcass373 174 of 4 0.90None
S2 cells (growing)302 44 of 4 0.73Down
Whole fly413 94 of 4

Looking for FBgn0051716. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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