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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051717 through 18771 annotations produced 1 hits



(CG31717):

Annotation Number : CG31717
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051717
Gbrowse : chr2L:10250736-10251595 (+) // 100.0 //
Probeset : 1625710_at
Accessions : protein= NP_723543;, nucleotide= NM_164902;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0003824 // catalytic activity // inferred from electronic annotation
FlyMine data for FBgn0051717.
VDRC has 3 RNAi stocks for FBgn0051717 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain186 ± 44 of 4 0.90None
Head250 ± 144 of 4 1.20Up
Eye283 ± 184 of 4 1.38Up
Thoracicoabdominal ganglion202 ± 104 of 4 1.00None
Salivary gland424 ± 204 of 4 2.07Up
Crop234 ± 24 of 4 1.10Up
Midgut424 ± 124 of 4 2.10Up
Tubule313 ± 64 of 4 1.50Up
Hindgut269 ± 124 of 4 1.30Up
Heart427 ± 134 of 4 2.08Up
Fat body299 ± 264 of 4 1.46Up
Ovary181 ± 44 of 4 0.90None
Testis184 ± 64 of 4 0.90None
Male accessory glands245 ± 114 of 4 1.20Up
Virgin spermatheca207 ± 94 of 4 1.01None
Mated spermatheca230 ± 194 of 4 1.13None
Adult carcass311 ± 204 of 4 1.50Up
Larval CNS163 ± 124 of 4 0.80Down
Larval Salivary gland369 ± 214 of 4 1.81Up
Larval midgut578 ± 494 of 4 2.82Up
Larval tubule966 ± 74 of 4 4.70Up
Larval hindgut297 ± 344 of 4 1.45None
Larval fat body677 ± 584 of 4 3.30Up
Larval trachea290 ± 304 of 4 1.42Up
Larval carcass253 ± 254 of 4 1.24None
S2 cells (growing)554 ± 164 of 4 2.71Up
Whole fly204 ± 94 of 4

Looking for FBgn0051717. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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