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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051719 through 18771 annotations produced 1 hits



chr2L:10463339-10474347 (-) // 99.87 // (multiple):

Annotation Number : CG31719
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1637054_s_at
Accessions : protein= , nucleotide= NP_723592; /// NP_723593; /// NP_723594;
Pathway : 0001522 // pseudouridine synthesis // inferred from electronic annotation /// 0009231 // riboflavin biosynthetic process
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain24 ± 14 of 4 0.80Down
Head61 ± 54 of 4 2.10Up
Eye38 ± 34 of 4 1.29None
Thoracicoabdominal ganglion9 ± 02 of 4 0.30Down
Salivary gland31 ± 32 of 4 1.08None
Crop196 ± 74 of 4 6.70Up
Midgut92 ± 44 of 4 3.10Up
Tubule4 ± 10 of 4 0.10Down
Hindgut158 ± 34 of 4 5.40Up
Heart33 ± 74 of 4 1.14None
Fat body7 ± 30 of 4 0.25Down
Ovary1 ± 00 of 4 0.00Down
Testis5 ± 00 of 4 0.20Down
Male accessory glands0 ± 00 of 4 0.00Down
Virgin spermatheca5 ± 11 of 4 0.20Down
Mated spermatheca8 ± 11 of 4 0.30Down
Adult carcass58 ± 34 of 4 2.00Up
Larval CNS4 ± 10 of 4 0.17Down
Larval Salivary gland1 ± 00 of 4 0.05Down
Larval midgut1 ± 10 of 4 0.06Down
Larval tubule3 ± 00 of 4 0.10Down
Larval hindgut216 ± 54 of 4 7.35Up
Larval fat body0 ± 00 of 4 0.00Down
Larval trachea4 ± 20 of 4 0.15Down
Larval carcass42 ± 64 of 4 1.43None
S2 cells (growing)11 ± 04 of 4 0.37Down
Whole fly29 ± 04 of 4

Looking for FBgn0051719. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime